Pangasianodon hypophthalmus (striped catfish): 113545719
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Entry
113545719 CDS
T05759
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp02010
ABC transporters
phyp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
113545719
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113545719
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
phyp02000
]
113545719
Transporters [BR:
phyp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
113545719
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
AAA_15
AAA_23
R1_ABCA1
MukB
Motif
Other DBs
NCBI-GeneID:
113545719
NCBI-ProteinID:
XP_026800992
LinkDB
All DBs
Position
Unknown
AA seq
2153 aa
AA seq
DB search
MGLLVQLRLLLWKNFTLRKRQKLRLVIELIWPLFLFFILVWVRSTNHPVYKGQCHYPNKP
MPSAGVLPWLQGMVCNIQNPCVSEPTPGETPGQVNNFNDSIISKALVEVQSLLADSSLLT
NIKRLSDDIIKWTSILENFNTAKGRSIPLHSVLRDNETFSEYLKSNLSVSSATSQRLMSV
RLRLNQLPALSRETDLRSTLCNSSVDRFLEFNSTSQRQEFQNITCSMTPNQLRQTRAVLL
QNLDNRKLMAAVPLALNLNPADFATLLASTSSHAAPLANQMSKLQTTVILNAMNSLDFHS
NPFGSLTLFMCGGNSSSNTSSTKPVFRMPPQATLSLSSNSSQGNSSEFCQNLIDTLTGTP
SLRLFWSSFRPLLQGRVLYTPDTPFTRQVMAQANSTFNALAKVGELADAWLENEDEIWNF
FQNSTQINTLRALLQNPLFSAVLDQRLNGSRLSSALIANFLFNGDEKDRPAGMPAFDWRN
IFNTTSQIATLVKQVIGCFNLDKFQAMASESMLVEQALKLLDQEKFWAGVVFTDLDVGSP
SHIRYKIRMDVEDTERTDKIKDRSWYPSARDNPFNDLRYVRGGFVYLQDMLDRAIVQTHT
GVRQTLGVYLQQMPYPCYVDDAFVSSIATTLPMFLVLAYMYTVCQTIKGLVLEKELRLKE
VLRVVGVRNGALWFSWFTENMVLLMVPCALISIMLKYGKILRYSDPSVIFVFLLVFCIAT
VMQCFFISVFFSRANLAAACGGLIYFLLYLPHVLCYAWRDVMTFRTKLATSLLSCVAFGY
GCENFARYEEQGIGIQWKNIMVSSQDDDPYTFIVSIFMMLIDALFYWILTWYIENIFPGQ
YGIPKPWYFPFTSSYWCGTPAGADIDPDPLDALEQQNGYLEKPAANLKAGVSIRNLVKVY
KTGKKLAVDKLSLDFYQDQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYVNGFDIRKDM
DSIRKTLGMCPQHNVLFNDLTVEEHIYFYARLKGRSSKEVKQEIDQMIKDVGLPHKRKDL
AKNLSGGMQRKLSVAIAFVGGSNVVILDEPTAGVDPYARRGIWELLLKYKTGRTIILSTH
HMDEADILGDRIAIISHGKVCCCGSSLFLKKTYGSGYYLTLARANQEIMTSKRHTGGNQL
SDASSLDEGIGSGSISTVEPADIADVTSVIRLHVPEANFLEVIGQELVYVLPYAGSKDGS
FASLFKELDLETERLGISSYGISDTSLEEIFLKVAEETGVDVETNEKGETLQRDWKRSSK
VSRSCSMSSAMEHRDSIASKQVEKKGRFTNRVEDGQRPACVNGKGSYVITGWPLIRHQFL
ALFIKRFHHARRSRKGIIAQVVLPALFVCLSLIFSLIVPPFVEYPSLELQPWMYGKPQNT
FYSADRTDVDEAVRVTRALLSEPGFGTRCMDGNPIPKYPCTPSGATDWFTPSVDPSILEI
FKNGNWSMQNPSPDCQCSTPQHSIMLPACPPGAGGLPPPQKTQNTTDTLQDLTGRNMTDF
LLKTYAKSGKIRYGGISVGAINSQVTLNESEITALVSDLKTLFNSSQNNITEKFLQDLEI
LLVDLGTKDNVKVWFYNQGWHAIVSFLNVATNAILRGNLPAGVQPKLYGISAFNHPLNLT
KEQLTTTLMSSSTDVVVAICVIFAMSFIPASFVLFLIQERVSKAKHLQFVSGVNPAAYWV
ANFTWDMCNYVIPCLIVIVIFLCFQQKAYVSPQNLPALILLLVLYGWAITPMMYPASFVF
SVPSTAYVVLTCINLFIGINGSIATFVMELFNDPNITDINNIVKQVLLIFPHFCLGRGLI
DMAKNQAMATLFISLGEDRFEDPLSWKMVGKNLCAMAVQGIVMFGFTLLIQYKFFCKPRL
VTGLPRAAGEEDEDVARERERVQRGKAENDLLRICDLTKVYSGKKVPAVDRITVGVPAAE
CFGLLGINGAGKTTTFKMLTGDIRPSGGEAFLSGYSIRTEMRQVHQNMGYCPQFDAIDDL
LTGREHLEFYARLRGVPEREVTTVAEWGIQKLGLVKYSNKSAGTYSGGNKRKLSTAMALI
GCPPLIFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEALCTRMAIMVNG
QFKCLGSIQHLKSRYESLPLCVCLCVCACVCVTVYVFLHPLRSYLVLVPICPT
NT seq
6462 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctggtgcagctcaggcttctgctctggaagaacttcactttgcgcaagaga
cagaagttgcggttggtaatcgagctaatatggcctctgttcctgttttttattctggtg
tgggtgagatccaccaatcatcctgtctacaaaggccagtgccattaccccaacaagccg
atgccctcggctggggtgttgccgtggttacagggcatggtctgcaacatccagaatcca
tgtgtcagtgagccgacgcctggagaaacccctggccaggtcaacaacttcaacgactcc
atcatttcaaaggcattagtagaggttcagtctctcttagcggactcctcgctgctgact
aacatcaaacgtctttctgatgatatcatcaaatggacttctatccttgagaatttcaat
acagccaaaggtcgctcaattcctctgcacagtgtgctgagagataatgagacgttctct
gagtacctgaagagcaacctgtcagtatcaagtgcaacttctcagaggctgatgagcgtg
agactccgactcaatcagttacctgctctatcacgtgagacggacttgcgctccactctg
tgtaactcctctgttgaccgcttcctggagtttaactcaacaagtcagagacaggagttc
cagaacatcacatgctccatgacacccaatcagcttcgtcagaccagagcagttctcctg
caaaatctagacaacagaaagctcatggctgctgtgcctttagcactgaatctgaaccct
gcagattttgccactcttctggccagcacaagctcccatgcagccccgctggcaaatcag
atgtctaaattgcagaccacagtcatcctcaatgccatgaactctcttgacttccactca
aatcccttcggcagtttgactctgttcatgtgtggtgggaattcaagctccaataccagc
agcacaaagccagtctttcgaatgccaccacaagcgacactctcattaagctcaaactca
tcccaaggcaactcaagtgaattctgtcagaatttgattgacactttgacaggcacaccc
agtcttcgtcttttctggagtagtttccgcccacttcttcagggacgagtcctctacact
ccagacacgccctttacacggcaggttatggcacaggccaacagcaccttcaacgctctg
gctaaagtcggagaactggctgacgcttggctggaaaacgaggacgagatctggaacttc
ttccagaacagcacgcaaatcaacacgctccgggctctgctgcagaacccactcttttca
gcagttcttgatcagcggctgaacggaagcagattgtcttcagcacttatcgctaatttt
ctgttcaacggtgatgaaaaggaccggcctgcagggatgccggcattcgactggagaaac
atcttcaacaccaccagtcagattgcgacactcgtcaagcaggtcattgggtgcttcaac
ttggacaagtttcaggccatggccagtgagagcatgttggtggaacaagccctcaagctg
ctggatcaggagaagttttgggctggagtggtttttacagacctggacgtgggcagccca
tcacacatcagatataagatccgcatggacgtcgaggacaccgagaggacggataagatt
aaagacaggtcctggtatccgtcagctcgtgataacccctttaacgacctgcgctatgta
agaggaggctttgtgtatctgcaggacatgctggaccgtgctatcgttcagacacacacg
ggcgtcaggcaaactctgggcgtctatttgcagcagatgccttatccatgctatgtagat
gatgcctttgtgtcatccatcgccaccaccctgccaatgttcctagtgctggcctacatg
tacacagtgtgccagaccatcaaaggtcttgtcctggagaaggagctgcggctgaaggag
gttctccgagtggtgggcgtgagaaatggcgcactctggttctcctggttcacggagaac
atggttctgctaatggtgccatgtgcgctgattagcataatgctgaagtatgggaagatt
ctgagatatagcgacccgtcagtgatcttcgtgttcttgctggtgttctgcatagccaca
gtcatgcagtgcttcttcatcagtgtctttttctcacgggcaaatctggctgccgcctgt
ggtggacttatctacttccttctctacctgccccatgtgctctgttatgcctggagagac
gtcatgaccttccgaactaagctcgccacgagcctgctgtcatgtgtggcatttggttat
ggctgtgagaattttgcccgatatgaggagcagggcattggcattcagtggaagaacatc
atggtcagctctcaggatgatgacccttacaccttcattgtctctatcttcatgatgctg
attgacgctctgttttactggatactcacctggtacatagagaacatcttcccagggcag
tatggaattcccaagccttggtatttcccatttacctcctcgtactggtgtgggactcca
gctggtgcggacatagacccggatcctcttgatgcactggagcagcagaatggttacctg
gaaaaacctgccgctaacctgaaagcaggtgtgtctataaggaacctggtgaaggtgtat
aagactggaaagaaactggctgtggacaaactcagtctggacttctaccaggaccagatc
acatcattcttaggacacaacggcgcaggaaaaaccaccactatgtccattctgaccggc
ctgttccccccaacgtccggcacggcttacgttaacggcttcgacattcgcaaggacatg
gacagtatacgcaagacgcttggcatgtgcccacaacacaacgtcttatttaatgacctc
actgtggaagagcacatttatttctatgctcgtctcaaggggaggagctccaaggaagtc
aaacaggaaattgatcaaatgatcaaagatgtcgggctgccgcataagcgcaaggatctc
gccaagaacctttcaggtgggatgcagaggaagttgtcggttgccatagcgtttgtaggc
gggtccaatgtggtgattctggatgagccgactgcgggagtggatccgtatgccaggagg
ggaatctgggagctcctgctcaaatataaaacgggccgtaccatcattctgtccacacac
cacatggacgaggcggacattttgggtgatcgcatcgccatcatctcccatggcaaggtc
tgctgctgtggttcctccctcttcctgaagaagacctacggcagcggctattacctcact
cttgcacgggccaatcaggagataatgacatcaaaacgccacacggggggaaatcagctc
agtgatgcctccagtttagatgaagggatcggttcaggaagcatcagcaccgtggagcca
gcagacatagcagatgtcacttctgtcatccgcttgcacgtccctgaggcgaacttccta
gaggtgataggtcaggagctggtgtatgtgctgccatacgctggctcaaaagatggcagc
tttgcctcgcttttcaaagagcttgatttggagacagagaggctggggatcagtagctac
gggatctcagacaccagcttagaggagatatttctgaaagtggcagaagagacgggcgtt
gatgtggaaacaaatgagaagggagagacgcttcagagagactggaagagaagctctaaa
gtgtccagatcatgtagcatgagttcagccatggagcacagagacagtatagcttctaaa
caagtagaaaagaaaggaaggttcacaaatcgtgttgaagatggtcagcggcctgcgtgt
gtgaatggcaaaggttcatatgttatcaccggctggcctctgatcaggcatcagttcctg
gctttgttcataaagcggtttcaccatgcaagaagaagcagaaaaggaatcattgctcag
gtggtcctcccagcactgtttgtgtgtctgtcgctgattttctctctgattgtcccaccg
tttgtggagtaccccagtctggaactgcaaccctggatgtatggaaaaccacagaacact
ttctacagtgctgacaggacggatgtggacgaggcagtgagggtaacacgtgctctcctt
tctgaaccaggctttggcacacgctgcatggatggcaaccctatacctaaatacccatgc
actccttcgggagcgacagactggttcactccttcggtagacccctccatcctcgaaatc
tttaagaatggaaactggagcatgcagaatccatctccggattgccagtgcagcactccc
caacacagcatcatgctgccagcctgccctcctggtgctggaggattaccaccaccccag
aaaacacagaataccacagacaccctacaggacctcaccggtcgaaatatgactgacttc
ttgctcaagacctatgcaaagtctggaaaaatacggtatggagggatctcagttggagct
ataaactctcaggtcacactcaatgaatccgagatcactgcacttgtttcagacctcaag
actctcttcaactcatcacagaacaacataactgagaagttcctccaggacttggagata
ttactggtagatttgggaacgaaagacaatgtaaaagtgtggttctacaaccagggatgg
catgcaatagtatcattcctgaatgtggccactaatgccatcctcagagggaatcttcca
gctggagtgcagcccaaactttatggcatctcagcctttaaccatccgctcaacctcacc
aaagagcagctcaccaccacattgatgtcgagctctacagatgtggtggtggcgatctgt
gtgatcttcgccatgtccttcatccctgccagctttgtcctctttctcattcaagagcgt
gtcagcaaagctaaacacctgcagtttgtcagtggagtcaatcctgctgcttactgggtg
gccaacttcacctgggacatgtgtaattatgtcatcccatgtctcatcgtcattgtcatc
ttcctctgcttccaacaaaaagcatatgtttcacctcagaacctgcctgcactcatcctg
ctgttggtgctctacgggtgggcaatcacaccgatgatgtacccggcctccttcgtgttc
agcgttcccagcacagcgtatgtggttctcacctgcatcaatctcttcattgggatcaac
ggcagcatcgccaccttcgtcatggagctgttcaatgacccgaacattactgatatcaat
aacatagtgaagcaagtgttgttgatcttccctcacttctgtctgggtcgtggcctcatc
gacatggccaagaatcaggccatggcaacactcttcatcagtctgggagaggataggttt
gaggatcccctgagctggaaaatggtggggaagaatctgtgtgccatggcggtacagggt
atagtcatgtttggcttcaccctcctcatccagtacaagttcttctgtaaacccaggtta
gtcactgggttgccaagagctgctggagaagaggatgaagacgtggctcgagagcgtgag
cgagtgcagagaggcaaagccgagaatgatctactcaggatttgtgacctcaccaaggtg
tactcgggtaagaaggttccagcagtggacaggataactgtgggtgtcccagctgctgag
tgcttcggcctactgggtataaatggggcaggaaaaaccacaacttttaaaatgctgact
ggtgacattcgaccctcaggtggagaagccttcctcagtggatacagcattcgtacagag
atgaggcaggttcatcagaacatgggttattgtcctcagtttgatgctattgatgaccta
ctaacaggacgagagcatctggagttctacgcacgcctcaggggggtgccagagagggag
gtcaccacggtagcagagtgggggatacagaaactgggtctggtgaaatactccaacaaa
tctgcaggtacctacagtggagggaacaaacgcaagctgtctacagccatggctctgatt
ggctgccctcctcttatctttctggatgagccgaccacagggatggatcctaaagctcgc
cgtttcctgtgggactgcatcctcagtgtgatcaaagagggtcgttcagtcatcctcacc
tcacacagtatggaggagtgtgaggctctgtgcactcggatggccatcatggtcaatggc
cagtttaagtgtctgggcagcattcaacatctaaagagcaggtatgagtctctccctctg
tgtgtgtgtctgtgcgtgtgtgcgtgcgtgtgtgtcactgtttacgtgtttctgcacccc
ctgaggtcatatcttgtgcttgtgcccatatgtccaacataa
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integrated database retrieval system
