Pangasianodon hypophthalmus (striped catfish): 113546265
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Entry
113546265 CDS
T05759
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113546265 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113546265 (xab2)
03041 Spliceosome [BR:
phyp03041
]
113546265 (xab2)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113546265 (xab2)
Spliceosome [BR:
phyp03041
]
Complex B
Other components
Prp19-related factors
113546265 (xab2)
Complex C
113546265 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_16
ARM_TT21_C
ARM_TT21
TPR_15
Tcf25
TPR_1
NRDE-2
RPN7
LTN1_E3_ligase_6th
DUF1478
Motif
Other DBs
NCBI-GeneID:
113546265
NCBI-ProteinID:
XP_026801832
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPVSTGKQDVVFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCITDPAYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQCK
ITRSRRTFDRALRALPITQHSRIWPLYLKFARKLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDEGFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGQDEDDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDALKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSRKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKSVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERSTQAVETEERHLMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQMCDPRMTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTVSDLAPGQSGIDDMKMLEQKAQQLAAEAEQDK
PKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDDEDEDGDGDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtttctaccggaaagcaagacgttgtgtttgaggaagatgatttgccttatgag
gaagaaatcatcaggaacccgtactctgtgaagtgctggatgcgctacatcgagcacaaa
caaaacgcaccgaagtcagtgctgaatatgatttacgaacgagcgcttaaagaactaccg
ggcagttacaaattgtggtacaactacctgagagagaggaggaagcagataaaaggaaaa
tgcatcacagatccggcgtatgaggaagtcaacaactgccacgagagagcgctggtgttc
atgcacaagatgccgaggatatggctggattactgtcagttcatcgtgtctcagtgtaaa
atcacaagaagccgtcgcacgtttgaccgagcgctcagagctctgcccatcacccagcac
tcccgcatctggcccctgtacctcaaatttgctcggaagttacccctgcctgagaccgcc
atccgggtttatcgccgatatctcaagctttctccagagaacgcggaggagtacattgat
tacctgcgctcggtaggaaggctggacgaggcagcggtccggctagcagccgtggtcaac
gacgaaggctttgtctcaaaagaggggaagtcaaactaccagctctggcacgagttgtgt
gacctcatctcccagaacccagacaaggtgacctctctgaacgtcggcgccatcatccgt
ggtggtctcacccgcttcacggaccagctgggcaagctctggtgctctctggccgattac
tacattcgcagcggtcattttgagaaggcgcgtgacgtgtacgaagaggcgattcagacc
gtcgtcaccgtacgagacttcactcaggtgttcgacagctacgcccagtttgaagagagc
atgatcgctgccaagatggagaccacgtctgagatgggacaagacgaagacgatgacgtt
gatctggagctgcgcttggcccggttcgagcagctgatcacgcgccggccgctcttattg
aacagcgtgctgctgcggcagaacccgcacaacgtccacgagtggcacaagagggtcaaa
ctctacgaaggcaatcctcgacagataataaacacctacactgaagctgtgcagaccgtg
gatgctctgaaagccacagggaagcctcactcactctgggtctcattcgcccggttctac
gaggataacgaacagctggatgatgccaggacgattttcgagaaggccaccaaggtgaac
tacaagcaggtggacgacctggcagcagtgtggtgtgaatacggagagatggagttacgg
cacgagaactacgagcaggcgttacgaatactcaggaaagctacggcgatcccatcgaga
aaagcggagtactttgattcgtcagagccagtgcagaatcgagtgtataaatccctgaag
gtctggtccatgttggcagatttggaggaaagcctcggcaccttccagtcaactaaatct
gtgtatgaccgcattattgacctccgcatcgccacgcctcagatcatcatcaactacgcc
atgttcctcgaagaacacaattactttgaggaaagctttaaggcatatgagcgcggcatt
gcgctcttcaagtggccgaatgtgtacgacatctggaacacgtacctcaccaagttcatc
gatcgctatggaggcaagaagctggagagagcgcgagacctgtttgagcaggctttggat
ggctgtccacccaagttcgcaaaaaccatctacctgctgtacgctaagctggaggaggag
tatggactggcccggcacgctatggctgtgtatgagagatccacgcaggctgtggagact
gaagagcgccaccttatgttcaacatctacatcaagagagctgcagagatctacggagtg
actcacaccagagccatctatcagaaagccattgaggttctcccagatgagcatgcccgg
gacatgtgtctacgcttcgctgacatggaaagcaaactgggtgagattgatcgtgcgaga
gctatttattcctactgctcccagatgtgtgatcccaggatgacagctaatttctggcag
acgtggaaggagtttgagatccggcacgggaacgaggacacgatccgcgagatgctccgg
ataaagagaagtgttcaagcaacctacaacacacaggtcaacttcatgtcctcacagatg
ctcaaagcaaccaccagctctacagtgtcagaccttgccccaggccagagcggcattgat
gacatgaagatgttggagcagaaagcgcagcagctggctgcggaagctgagcaggacaaa
cccaaacctaaagacaagatcctctttgtcaggagtgacacctctcgcagtgaactggct
gaactagccaagcaggctaacccagacgagattgacattgacgatgatgatgaggatgag
gacggagatggagatggagaaccagacgaggtgcagctcgagcagaaaagcgtccctaca
gctgtgttcggaggactgaaggacgactga
DBGET
integrated database retrieval system
