Pangasianodon hypophthalmus (striped catfish): 113546992
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Entry
113546992 CDS
T05759
Name
(RefSeq) transcription factor Sox-10-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113546992
Transcription factors [BR:
phyp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113546992
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
113546992
NCBI-ProteinID:
XP_026802932
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MSAEEQSLSEVELSPGVSDDGGSVSPGRAGHAGDSQLVSGGGAEEEGAGLSHAGVSVKSD
EDDDRFPIGIREAVSQVLNGYDWTLVPMPVRVNTGSKSKPHVKRPMNAFMVWAQAARRKL
ADQYPHLHNAELSKTLGKLWRLLNENDKRPFIEEAERLRKQHKKDYPEYKYQPRRRKNGK
PGSSTDSDAHSEGDVTHSQSHYKSLHLEAGHGAGAGSPLTDGHHTHPAGSNHSPPTPPTT
PKTEHQGGKSGEGKREGGARGLGVGADGSSASSSSSSSSKPHLDFVNVDIGEISHEVMAN
MEPFDVNEFDQYLPPNGHHPSGSGSASCPAPSPSPYSYWLSKQQLSSEGGKTQIKSETHF
SGNADASVGGASTSGGGASAHVTYTPLSLPHYGSAFPSLASRAAPFAEYGDHQASGSYYT
HSGQSGLYSAFSYMSSAQRPIYTAITDPAPGNSPTHWEQPVYTTLTRP
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgaagaacagagtctgtcagaggtggagctgagtcccggggtgtcggatgat
ggcggctccgtgtctccggggcgggcgggtcacgcaggagactctcagctggtgtcagga
ggtggggcagaggaggaaggggcgggactgtctcatgcaggagtctcggtaaaatcagac
gaagatgacgatcgcttccccatcggcatccgcgaggcggtcagtcaggtgctgaatggc
tatgattggacgctagtgcccatgccggtgcgcgtcaacacgggcagcaagagcaaaccg
catgtcaagaggcccatgaacgccttcatggtgtgggctcaagccgcacgccgcaaactc
gccgaccagtaccctcatctacacaacgctgagctcagcaaaacactcggcaaactgtgg
aggctcctgaatgagaatgataagcggccgttcatcgaggaggcggagcgtctgaggaag
cagcataagaaagattatccggagtataaataccagcccaggagacggaagaacgggaag
ccgggatccagtaccgacagcgacgcccactctgaaggtgatgtcactcacagccaatca
cattacaagagccttcacctggaggcggggcatggtgctggggcagggtctcctctcact
gatggacatcacacacacccagcaggctccaaccacagccccccgactcctcccactact
cccaaaacagagcaccagggtggcaaatcaggagaggggaagagagagggtggggccaga
gggctgggagtgggggcagatggaagctctgcctcttcatcgtcttcctcttcctcaaaa
ccacacctggatttcgtgaacgtggacatcggcgagatcagccatgaagtgatggccaac
atggagccatttgatgtcaacgagtttgaccagtacctgcctcctaatgggcaccaccca
tcaggctcaggctccgcctcctgcccagccccatccccttctccttactcctactggctg
tcgaaacagcagctaagctcagaaggtgggaaaacacagatcaagagcgagacgcatttc
tcgggtaatgctgatgcttcagtgggcggggcttccacatcagggggtggagcatcagct
catgtcacatacacacctctcagcctgcctcattatggctctgctttcccctctttggcc
tccagggcagcaccgtttgccgaatacggagatcaccaagcatctggatcatattacaca
cactcgggccaatcagggctttactccgccttctcctacatgagctccgcccagaggccc
atttacactgctatcactgaccctgcccctgggaatagccccacccactgggaacagcct
gtgtataccactctgacccggccgtaa
DBGET
integrated database retrieval system
