Pangasianodon hypophthalmus (striped catfish): 113547052
Help
Entry
113547052 CDS
T05759
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113547052
03036 Chromosome and associated proteins [BR:
phyp03036
]
113547052
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113547052
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113547052
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
113547052
NCBI-ProteinID:
XP_026803040
LinkDB
All DBs
Position
Unknown
AA seq
1463 aa
AA seq
DB search
MEDFKNTEDQSTPVSHEDTKQILKESTTSAPFNCVTLRSSSTPSLSPYPAPGGPIVLPAS
DNNNAKQTTVANGQVPPAVSVWHMSREVPPRFRNHQEPKILLKRGQSLDGISPFLHTGDQ
SNANTTQRSASLTYANSTCGPGSGAPLLSQGMDKIVVDGSDLQAWPSIVDSRRQNESLSK
ASWECKQGMQKNKTEQVELGVTADGSNSESVSPSSCETALNSADGESMQQKIQRQDGGQF
EDNRVEKEVGPKQAETDIADDCKGLNEAVQLPTFSSNLEALNPDTCHSRGSGELLETGEM
WGTSGERQVGWKVTGNDGVSHEVSQTVWDEERSGLKKQAATIKRSDVPKEGMSGLVKESS
SGCLQDTQMIATNTTTTDSEKRMNEREWEGSECESAGHGSSEDGTWSLNNSRAQASCTEV
TLQSMLSRSDLDPRVLCNTGWGQTKIKQSIAWDLEVDSSSESGRDWTGPAQIDINSPSCA
QWSRDLQGQVKGARSQGAWSKGGQSEEKIDSKQGALLTGRGNSWVEAVEDEQVGRWDGNR
RDGGQRREGDRGSWGLGDTQWGENKGRAGQGEKSWADSENEGWRSKQHQGWGDNHQPQHI
PNNQTALKGPNQQQLQQSQSQLTQPRGSQESRDPPAGPVALNQSSGWKPGPIPHTSSATE
PSGWEEPSPQSISRKMEIDDGTSAWGDPAHYDNRSVNMWDKSNLQQRGQPSQQQHESMPA
TILPSRDKNTAWERSAGASEQVMDNSTAGWGKAFDAPSGWRDPEESGKGTGWGGSRSNPA
KTGSKAMQDGWGDEGLNTSRHSSWEEEDSGSGMWGNRSQDNTSSFSSGGWNQGQGGRRTG
AKGPLKGNGGGSWTGSITRQLSNMGITDEEPVSASDRSRRGMSDFNGEMRRGGRGGGSFR
SHGSKEPGTTGVFNTSGVAHLRGMHQPGVHHINPSPGVRAQVPQQFLPPQVSGSVLNPMF
PPQLSPQHLAMLSGIHPHMQQVQLAYQLILQQQQQQQHHHFLSHRKFPHPPPPPLLQHQD
PQQLARIMAVLQQRPKTPTSFPGFVPGVEPESVIGGAKEVGGAQPQFKWMMEAGHPLCPS
PPDPIMLKNGLLPGPVKLRGDSSYPHYDLVGVENMGVASPHLTDNWHRTPGGKLGSTPST
PTWPPEFQPGVPWKGVQSPEPDPNPYSGMLGENTLTDTEHHLLQDNTVSLSEMNTVLPSP
GAWPYCASDTHNSAKFPALATSWPPEPIGHRTNRNSSQLPRPPPGLTHQKQSPWLGVGPH
MPRGWSSERQSQESPFGTESSWSGGSSTGSSWLLLRNLTPQIDSSTLKTICLQHGPLMTF
NLGLAQGSALIRYCSPDEAAKAQSALHMCVLGNTTILAEFVSEEDVARHFTHSQSRETDG
DGETDREVESETGGGGEAKLGWENLDGAGLSLFNRWSHSREGGVWGGVASGYHGNNLWGS
PQVEDRGPGLLPGNLLGGGTDTL
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atggaagactttaaaaatacagaagatcagagtactccggtttctcatgaggacacaaaa
cagatacttaaagagtcgaccacatctgcccccttcaactgcgtgacactgcgctctagt
tccactccatccttgtccccttatcctgctcctgggggccctatagtgctccctgcaagt
gataataataatgcaaagcaaaccactgtggcaaatggacaggtgccccctgcagtgtct
gtgtggcacatgtcccgtgaagtgccacctcgtttccgtaaccatcaggagcctaaaatt
ctgctgaagagaggccagtctctagatggaatttcaccattcctccacacaggggatcag
tcgaatgcaaacactacacaacgctcagcgtctttaacttatgcaaattccacatgcggc
cccggctccggagcaccgctgctgtctcagggaatggataagattgtagtggacggctct
gacctgcaggcatggcccagtattgtggacagcagaaggcagaacgagtccctaagcaaa
gcttcatgggaatgcaaacaaggcatgcaaaagaacaagacagaacaggtggagctcggc
gtcactgcagatggaagcaactcagagtcagtctccccttcctcctgtgaaactgccttg
aattcggcagatggagaaagcatgcagcagaagatacaacgccaggatggaggccaattt
gaggacaacagggtggaaaaagaagtaggaccaaaacaagcagaaactgatattgctgat
gactgcaaagggttaaatgaggcagtacaacttcctactttcagttcaaatctagaagcc
ttaaatcctgatacatgtcatagtaggggaagtggagaactgctggagactggagaaatg
tggggaacatctggggaacgccaagtgggatggaaagtcactggaaatgatggagtcagc
catgaggtatcgcagacagtctgggatgaagaaagaagtggtctaaaaaagcaggcagct
acaattaagcggagtgacgtgccaaaagaaggcatgagcggacttgtaaaagaaagctct
tcaggttgtttacaagacactcaaatgattgcaaccaacacaacaacaacagatagtgag
aaaaggatgaatgaaagagaatgggagggatcagagtgtgagtctgctggccacggaagt
agtgaagatgggacttggtctctcaacaactccagagctcaagcctcatgcactgaagtg
accttacagagcatgctcagtcgaagtgatctggatcccagagtactttgtaacactggc
tgggggcagaccaagatcaagcagagcatagcctgggatttggaggtggacagtagctct
gaatcaggtcgagactggactgggcctgctcagattgatataaacagccccagctgtgct
cagtggtccagggatttacagggccaggtgaagggggccaggagccagggggcatggagc
aaagggggtcaaagtgaggagaaaatagatagtaaacagggcgctctactgacagggaga
ggaaacagctgggtggaggctgttgaggatgagcaggtaggaaggtgggatgggaatagg
agagatggtgggcagcggagagaaggggacaggggcagttggggcttaggagacactcag
tggggggaaaacaagggtagagctggacaaggtgagaaatcatgggctgactctgagaat
gagggatggagaagcaaacagcaccagggatggggggacaaccaccaaccgcaacatata
ccaaacaatcagacagcactgaaaggcccaaatcagcagcaactgcagcaatctcagtcc
caacttactcaaccaagaggctcacaggagtccagggatccacccgcaggcccagtggca
ctgaaccaaagctcaggatggaagcccggtccaatcccacacacgtcttcagccactgag
ccaagtggttgggaagagccctcaccccagtccattagcaggaagatggagattgacgat
ggtacatcggcctggggtgaccctgctcactatgacaacaggagtgtcaacatgtgggac
aagagcaacctgcagcagaggggtcagccatctcaacaacagcatgagtccatgccagcc
accatcctgcccagcagagacaaaaacacagcgtgggaacggagtgctggtgcttctgaa
caggtcatggacaacagcacagcaggctgggggaaggcctttgatgctccctcaggctgg
agggatccagaggaatctgggaaggggacaggatggggcggctcccgctccaatccagcc
aagactggttcaaaggctatgcaagatggctggggtgatgaaggtttaaacacttcacgc
cattccagttgggaggaggaagatagtggttctggcatgtggggtaacaggtctcaggac
aacacttcttccttttcctctgggggttggaaccaaggtcagggtggcaggagaaccgga
gcaaagggtcctctgaaaggaaacggtgggggttcctggacaggttcgataactcggcag
ttgtcaaacatgggaatcacggacgaagaacctgtgtcagcatcagacaggagcaggaga
gggatgagtgactttaatggggagatgaggaggggaggaagaggaggaggaagctttcgc
tcacacggctccaaggaacctggcacgacaggtgtgtttaataccagtggtgttgcacat
ttaagaggaatgcatcagccgggtgtgcatcacataaatccttcccctggagtacgagca
caagtgcctcagcagttcctccctcctcaggtttcggggtccgttctgaatccgatgttc
cccccacagctctcccctcagcacttagccatgctcagtgggatacacccccacatgcag
caggtccagctggcttatcagcttatcctgcaacagcagcagcagcagcagcatcatcat
ttcctgtctcacaggaagttcccccatcctcctcctcctcctctgcttcagcatcaggac
ccacagcagttggcccgcatcatggccgttcttcagcagcgccccaaaacccccacatcc
ttcccgggctttgtgccaggggtggagcctgagtccgtgattggtggagcaaaagaagtg
ggaggagctcagcctcagtttaaatggatgatggaggcagggcatccactttgcccctcc
cctcccgatcccataatgcttaagaatggtctcttaccaggtccggtgaagctccgaggc
gactcctcgtatccccactatgatctggtgggggtggagaatatgggtgtggcctctcca
catctaactgacaattggcatagaacccctggaggcaaattaggctccacccctagcacc
cccacctggccaccagagtttcagcctggtgttccctggaaaggtgttcagagccccgag
cctgacccgaacccctacagtggaatgctgggggagaacacactcactgatactgaacac
cacttactgcaggataacacagtctctttgtcagagatgaacaccgtactgccttcacct
ggtgcctggccttactgtgcctccgacacacacaactcagctaaattccctgcgctggcc
accagctggcctcctgagccaatcggacacaggaccaatcgaaacagctcccagctgccc
cgcccccctccgggcctgacccatcagaaacagtctccgtggttaggggtggggcctcac
atgcccagagggtggagctcagagaggcagagtcaggagtcaccttttggtacagagagc
tcatggagtggtggatcatctacaggaagttcatggctgctgctgcgcaacctcacacca
cagatcgatagctccactctaaagacaatttgcctgcagcatggcccactgatgaccttt
aacctcggcttggctcagggcagcgctttgattcgctactgcagcccggacgaggcggcc
aaggcccagagcgcactgcacatgtgtgtcctgggtaacaccaccatcttggccgagttt
gtgagcgaggaggacgtggcccgtcacttcacacattcccagagcagagagacagacgga
gacggagagacagacagagaggtggagagtgagacgggtggaggaggagaggcgaagctc
ggctgggagaacctggacggagccggactctctctgtttaaccggtggagccacagccga
gagggtggggtctggggaggtgtggcatctggttaccacggcaacaacctatggggttct
cctcaggttgaggacagaggacctggcttgttgccaggcaacctattaggtggtgggact
gacactttgtga
DBGET
integrated database retrieval system
