Pangasianodon hypophthalmus (striped catfish): 113547150
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Entry
113547150 CDS
T05759
Name
(RefSeq) ribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113547150
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
113547150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
zf-CCCH
UBA_N4BP1
SAM_CEP-1_C
Motif
Other DBs
NCBI-GeneID:
113547150
NCBI-ProteinID:
XP_026803191
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MSIGASLIPAAFPPVLDNFLWSDCCSTVCVSSFVHADSLTWASSLHPSKLCVRMEQNQPE
EQADLTSEFQSQLDLFRKLGFSDAQVRAVLLKLGLHTDTNRILGELIQVRAAETEGFLGP
PALVPHGESQRKSHSISSLPTEQEDAVQDEDALKPIVIDGSNVAMSHGNKEVFSCLGIQL
AVKYFLDRGHTDVTVFVPSWRREQPRPDVPITDQQILRELERKKILVFTPSRRVAGKRVV
CYDDRFIVKLAYDVDGIIVSNDTYRDLQGEKPEWKRFIEERLLMYSFVNDKFMLPDDPLG
RHGPTLENFLRKTPRATKKLPCPYGKKCTYGIKCKFSHPERGKQSQRSLADELREKAKMP
YFPQKPSMAGPNPSQGASLEEVMEQKLTLNQSGPLKKTHTSENMLVVKNTPQSTSRKSPS
KRDRSGQYSPPNPDCISASFQEYLDSGLGSYECHSEHQCGGEQRKSKNPSNGWFRHPPTC
SQSLNQSNLQSNPGYHPHHMSIAASQNPSNMPYSYPQYHSYGGAPYPPGNFPQYSVPHEY
HHRSMPPPQSGYWSEPYRHFGHVPPGPVQGDSTPWNHPMPEKEQVRKKLLAVFNARLVDR
AMEMFPNLMDPQKLAVEIINLQSYEGVL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagtataggcgccagtctcatccctgctgcctttcctccagttttggataatttcctt
tggtctgattgttgcagcactgtgtgtgtgtcctccttcgtccacgcagactcactcaca
tgggcgtcttcgctccatccatccaaactttgtgttagaatggaacaaaatcagcccgag
gagcaagcggacctgacctctgaatttcagtctcagctggatctgtttaggaagttgggc
ttctctgatgctcaggtccgagctgtgctactcaagctgggcctccacaccgacaccaac
cggattctgggagagctgatacaggtgagagcggcagagacagagggtttcctcggtccg
ccagcgctggttccacatggtgaaagtcagaggaaaagtcacagcatttcgtctctacct
actgaacaagaggacgcagtccaggacgaagacgccctcaagccgatagtgatagacggc
agcaacgtagcgatgagtcacgggaacaaggaagttttctcctgcctgggaatccagctg
gctgtgaagtacttcctggatcgagggcacacagatgttactgtgtttgtgccatcgtgg
aggcgggaacaacccaggccggacgtgccgatcacagatcagcaaattcttcgtgagctg
gagcggaaaaagattctagtcttcactccatcaaggcgcgtggcaggaaagcgggtggtg
tgctatgatgaccgcttcatcgtaaagctggcatatgatgtggatggcatcatcgtgtct
aatgatacctaccgagacctgcagggggaaaaacctgagtggaaacgcttcatagaggag
cggttgctcatgtactcctttgtcaatgacaagtttatgctcccagatgatccactcggg
agacatggacctactctggaaaactttcttcgcaagactcctcgagctactaagaaactc
ccctgcccctacggtaagaaatgcacctacgggatcaagtgtaagttcagccacccagaa
cgtggtaaacaatcccagcgttctttggcagatgagttgcgtgagaaagccaaaatgccc
tactttccccagaaaccatccatggcaggcccaaacccttcccaaggagcctctttggag
gaagtcatggagcaaaaactcactctcaatcaaagtggtccactcaagaagacccacacc
agtgagaatatgctggtggtgaagaacacaccacagtctacttcaagaaagtccccttca
aagcgagatcgttccggacagtactccccaccaaatccagactgcatctctgcttcattt
caggagtacttggactcgggcctgggctcgtacgaatgccacagtgagcaccagtgtgga
ggagaacaaagaaagtccaagaatccttctaatggatggttcagacatcctccaacttgc
agccagtccttaaaccaatccaatttacaatccaatccaggttaccatccccaccacatg
agtatagctgcatcccaaaacccaagcaacatgccatactcttaccctcaatatcactcc
tatggaggagcaccttacccaccagggaactttccccagtatagcgtaccccatgagtac
caccacagaagcatgcctccgcctcaaagtggctactggtccgagccatacagacacttt
ggccacgtgcctccaggacctgtgcagggtgacagcactccttggaaccatccaatgccg
gagaaggagcaggtgaggaagaagctgctagctgtttttaatgcccgtcttgtggacaga
gcaatggagatgttcccaaacctaatggaccctcagaaactggctgtggaaatcatcaac
ttgcagtcatatgagggggttttgtga
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