Pangasianodon hypophthalmus (striped catfish): 113547151
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Entry
113547151 CDS
T05759
Symbol
synpo
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
113547151 (synpo)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Calsarcin
PhoX
Motif
Other DBs
NCBI-GeneID:
113547151
NCBI-ProteinID:
XP_026803193
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MERGHNSVKGGISWTGHGTTTHGTMISCEENTDRSGTDSWEKEKHSWVKAKPLLTSSTGR
PVRKTNLGRSASLSEKELKEARTRSQIIAAQLTVPSNPNSRGVQLFNRRRERVNAFTLVS
VAGEGEGSHQEFHNEPDSPSPSALTWNRECSTDSQFKDLKHKRSETQLRWPTVVTPSKGH
KMEEAGEVACEVGDSVQERHFLPVNDKDEEIPEHGEAGKDVTSGGGNSPAVSNPNQEREQ
EVQLNGAHESPSEALKAIPNGSHSTETNSKADDSASKQSSITNRTALPFFSPVTVNSTRA
SSLSPDIPLAPSYSTPPLPAQYEPPATAYSGQEPPTFVKPGFAVSSRQVFSPPPPAPSYP
TPPLPGYTSLPPSIPSDPPPPSAMSPPPSPAYYTPLTTPSSTYVPQILADRRSVTPNRTG
VLDEGRGRRSNRKPMFTFQEKPKLSPNPELLSLVQGTDEKKRGRGQAETPQEEEQLALGA
EASNFLVKDESGVEEALVPEWASTLKSSRTRARVEHKPEQALTNASGKGAELFAKRQTRM
EKYVHENAEGLRSPSPTTSLPPSWVYPSNMPGRVKAMINASNITAEISKTLHSQHATQKK
NVPAKAPVPAPVLENPTLENGCSRVEMELSRHQPYQLNSSLFILNPTRDPISTLPKAAPP
PKPVVMGSSYSKQTSLAATPIPTQYDSHAYRSAHCFSPPMMPLESVSRGGTTPVSGLAPE
RVTTSRSIIQAPKPTFSTKKAGITPQAKEASPVAPQCNSPSSPTPWTPNLSRRLSSTDRS
PSAVWSPSSQRSSLVTSPPPRTMHNPINSVPSSPSPRSIHNSMTCSPNSGPIHNPVTSSI
TQQSAQGPISPPPTPKPFHNPVTSTPTPQSISSSPTPKPFKSSVSIISLSRPTNNRTPTT
PISPPWETRCQSPIPLQDTKANHRLLAKNIINAAKRKNSLSPGALSGHNLLMSPVSSTIL
PFETKPQSPFRSRSLGAQSPTFTSPPATPTQMIRSPLRLYTTRSLTDSDASLESEDSGMR
SPGVRSHNTCPRGWSGNLRLKRGGMSEDL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaggacacaactctgtcaagggagggatcagctggactggacacggtaccaca
acccatggtaccatgatctcatgtgaggaaaacacagacaggagtggaactgattcctgg
gaaaaggagaaacacagctgggtcaaagcgaagcctctgctgacctccagcactggtcgc
ccagtgaggaaaacaaatcttggccggagcgccagtttgtctgaaaaggagctgaaggaa
gcaaggacacgaagtcagatcattgctgcacaactgactgtgccgtcgaaccccaactcc
cgaggcgtccagctcttcaaccgccgcagagagagagtgaatgccttcacactcgtgagt
gttgctggagaaggagaaggaagccaccaagagttccacaatgaacctgactcaccttct
ccaagcgcattaacatggaacagggagtgttcgactgacagccagttcaaagacttgaaa
cataaaagaagtgaaacacagctccggtggcctactgtcgtaacacccagcaagggacat
aaaatggaggaggctggggaggtggcatgtgaagtgggagacagtgtgcaagagaggcat
tttctccccgtaaatgataaggatgaagagattcctgagcatggagaggcagggaaggat
gtcacctctggtggtggcaatagtcctgctgtttctaatcctaaccaagaacgtgagcag
gaagtgcagctaaatggggcacatgaaagcccttcggaggctcttaaagccatcccaaat
ggaagccacagcactgagaccaatagtaaagcggatgactcagcatcgaagcagtcgtcc
atcaccaacaggacagctctgccctttttttcccctgttacggtgaattcgactcgagcc
agcagtctctctccagacatccctcttgctccgtcctactccactcctccacttccagct
cagtatgaaccacctgctacggcatattctggccaagaacctccaacttttgttaaaccg
ggttttgcggtatcctccagacaagtgttctcccctccacctccagctccttcgtaccca
acccctccacttcccggctacacgagcctacctccatctatcccatctgatcctcctcca
ccatcagccatgtctccccctccatcacctgcctactacactcccttgaccacaccaagc
tccacctacgtccctcagatactggctgacaggaggtcagtgacgcccaatcgcacgggt
gtcctagatgaaggccgaggtaggcggtctaaccgcaagcctatgtttacatttcaggaa
aagccaaaattatctccgaatcccgagctcctgtctctagtccagggaacagatgagaag
aaaagaggcagaggacaggcagaaacacctcaggaggaggagcagctggctctaggggca
gaggcctccaatttcctggtcaaggatgagagtggtgtggaagaggcattagtgccagag
tgggcctcaacactgaaaagctccagaactcgagccagggtagagcacaagcctgagcaa
gccctaaccaacgcatccggcaaaggagcagagctgtttgccaaacgccagaccagaatg
gagaaatatgttcatgaaaatgcagagggactaagatcaccttctcccaccacgtctctg
cctccctcatgggtgtatccgtcaaacatgcccggccgcgtcaaggccatgattaatgcc
tccaacatcaccgcagagatttcaaagactctccattcccagcatgccacacagaaaaag
aatgtgccagcaaaggcaccagtaccagctccagtcctggagaacccgacattggagaat
ggctgcagtagagtggaaatggagctttcccggcaccagccttaccagctcaattcatcg
ctgttcatcctcaacccaaccagagaccctataagcactcttcccaaagcagcaccccct
cccaaaccagtggtgatgggatcctcatactccaaacagacgtctcttgcagctacccct
atcccaacccagtatgactcacatgcctacaggtcggcccattgcttctccccacccatg
atgcctctggaatcggtgagcaggggtgggaccacccctgtgtcaggtttagctcctgag
cgtgtgacgacttctcggtcaatcatacaggcacccaagcccaccttctcaaccaagaaa
gctgggattaccccacaggccaaggaagcctctccagttgcaccacagtgcaacagcccc
agtagcccaacgccttggacacccaacctgtcccgccgcctcagcagcacagacagatcc
ccaagtgcagtgtggtcccccagcagccagcgcagctctctggtcacctcccctccacca
agaaccatgcataacccaatcaactctgttccctcttcaccatcaccaaggtcgatccat
aattccatgacctgctccccaaactcaggccctattcataacccagtcacttcctccata
acacaacagtctgcccagggccccattagccctcccccaaccccaaaacccttccataac
ccagtcacttcaactccaactccacagtccatcagctcctccccaacaccaaaacccttc
aaaagttctgtctccattatctcattgtccaggcccactaataaccgcacccccaccact
cctatatctccaccttgggaaacaaggtgccaatcccccatacctcttcaagacaccaag
gccaatcaccgcctcctagccaagaacatcatcaacgcagccaagcgtaagaacagcctg
tcgcctggggcactaagtggccacaatctccttatgtctccagtgagcagtactattctg
ccctttgagaccaaacctcagagtccctttcggtctcgctcactaggtgcccagtcaccc
acattcaccagccccccagccacccccacccaaatgatccggtcccccctgcgcctctat
accactcgctcactcactgattcagatgcctcactggaatcagaggactctggaatgcgc
tcccctggggtccgcagtcacaacacctgccctcgtggctggtctggaaacttgaggctc
aaaagaggtggaatgtcagaagacctgtag
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