Pangasianodon hypophthalmus (striped catfish): 113547203
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Entry
113547203 CDS
T05759
Symbol
pcdh18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113547203 (pcdh18)
Cell adhesion molecules [BR:
phyp04515
]
Cadherins
Protocadherins
113547203 (pcdh18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
IglC
Motif
Other DBs
NCBI-GeneID:
113547203
NCBI-ProteinID:
XP_026803248
LinkDB
All DBs
Position
Unknown
AA seq
1162 aa
AA seq
DB search
MEQLKTRTGATALTLLALLHLAFLVTPAAAVTRDPPGKTLKYKVLEEQRVGTVIGRLRED
AAAALARLPSSVSPRFRAMHAGGSAPLIAVREEDGEISVGSRIDREALCGSHPNCTLEFD
VVTLPAEHLQLFRVQVEVLDVNDHPPRFARSVVPVEISESAAVGTRLPLDAASDPDVGDN
ALHAYSLERNGFFRIDVRTRTDGARYADLVVVRELDRETQSSFQLLLSAADSGSPPRSGS
TLLKINVLDSNDNSPVFEQQAYSVSLPENSPPGTLLVDLNATDPDEGTNGKIIYSFSSHV
SLKILETFKIDPENGQITLIKKVDYETTSSYELDVQAQDMGPNSIPGHCKIIVKVVDVND
NKPKININLMTQGKEEVAYISEAAPIDTFIALVRVDDSDSGLNGEVTCKLHGHGHFRLQK
TYENNYMILTNVSLDREKRSEYSLTVIAEDRGSPSLSTIKHFTVQVQDENDNPPRFEKSR
YEIFKSENNSPGAYLTSVSATDPDLGTNGQVTYSILESTVQGSSISTYVTIDPSNGAVYA
LRSFDREEVGRLAFTVQAQDGGGGASLSANATVILTVLDENDNAPIIVAPALSNHTADVP
LWRQAEPGRLVTAIKTSDRDAGANGEVTCSIVGGNEEGLFLMEPRRCELRTNGSVDSLGR
ESFDLAVLVQDRGASTRLSTRAVLHILLRDHSESHIVLPSDSGSQAPLDLSMIIIISLGA
ICGVLLLVMVLFATRCSRDQKDPRHSYNCRVAESTYQNHPKKPARQIHKGDITLVPTVNG
TLPVRAHPRSPSGSPAPDSRHSHHSRQSLNSLVTISSNHVPENFALELAHATPPVEQVSQ
LLSILHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDCEMGRESPL
LGEGFGEVFTPDGQHRPHPAMKLCTEECRVLGHSDQCWMPPLTSQATADYRSNLYIPGED
PQQAPAPETTQSGESTLKKKSFSTFGKESEEEEGQEGEAEKGEDLCGTTSLLSEMNSVFQ
RLLPSSLDAYTETNETERVPVGTGSLERRKGHLPGKANAASAYQHGVAAWAANTHFQNPG
HGHAPASHMSTSLAAPPLAAPLSMSASCSKWLPAMEEIPENHEEDELESVLHGKRCESRS
EIMDASELVAEINKLLQDVRQS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggaacagttgaagactcgcaccggagccacagcactgaccctcctcgcgctcctgcat
cttgcgtttttggtcacgccggcggcggcggtgacgcgcgatcctcccggtaagactctg
aagtacaaagttctggaggagcagcgcgttggcaccgtgatcggcaggctgcgggaggac
gcggcggcagcgctggcgcgtttaccgagctcggtgtcgccgcgctttcgcgctatgcac
gcaggcggcagcgcgccgctgatcgccgtgcgcgaggaggatggtgagatcagtgtgggc
tcgcggattgaccgagaggcgctgtgcggcagccacccgaactgcacgctcgaatttgat
gtggtcactctgcccgctgagcacctgcaactcttccgtgtccaggttgaggtgcttgat
gtgaatgaccacccgccccggtttgcccggtcagttgtgcctgtggagatttcagagagc
gcagccgtgggaacgcgcctgccattggacgccgcttcagacccggatgtgggtgacaac
gcgctgcatgcatactcactggagcgaaatggcttcttccgcattgatgtccgcactcgt
accgatggtgcccgttacgctgacctggttgttgtacgagagctggacagggagacccag
tcgagcttccaacttctcctcagtgcagctgattcaggctcgccgccacggtctgggtcc
acacttctcaaaatcaatgttctggactccaatgacaacagcccagtgtttgaacagcag
gcctattccgtcagccttccggaaaactctccacctggaacactgctggtggatttgaat
gccacagacccagatgaaggcaccaatggcaagatcatctactccttcagcagccatgtg
tcactcaagattcttgagacattcaagattgaccctgaaaatggacaaatcactttaatc
aagaaggtagattatgagactacatcgtcctacgagcttgatgtccaagcgcaggacatg
gggcctaactcaattccgggccactgcaagatcattgttaaagtggtggatgtaaatgac
aataagcctaaaattaatatcaacctgatgacgcaggggaaggaggaggtggcctacatc
tcagaggcagcaccaatagacaccttcatcgcattggtgcgtgtggatgacagtgactct
ggtctgaatggagaagtgacatgcaaactgcatggccacggccacttccggctgcagaaa
acctatgagaacaactacatgatcctgaccaatgtgtctctagaccgtgagaagcgttct
gaatacagcctgacggtgatcgcagaagacagaggttctcctagcctctctaccatcaaa
catttcacagtgcaagtgcaggatgagaacgacaacccacctcgctttgagaagagccgc
tatgagatcttcaagtctgagaacaattcacctggtgcatatctcacctcggtgtcagcc
actgatccagatctgggcaccaatggtcaggtgacctactctatcctggaaagcacagtt
caggggagctccatctccacctatgtgaccatcgacccgtccaatggtgccgtgtatgcg
ctgaggagcttcgatcgtgaggaagtgggccgcttggcgttcacagttcaagcgcaggat
ggtggaggcggggcctcactcagtgccaatgccactgtcatcctgactgttctagatgag
aatgacaatgcgccaatcattgtggcaccagcactcagcaaccacacagccgatgtgcca
ctttggaggcaggccgaacctgggcgcttggtgacggccatcaagaccagcgatcgggat
gcaggagccaatggagaagtgacgtgctccattgtgggaggaaacgaagaggggttgttc
ttgatggaaccgcgaaggtgcgagctcaggaccaatggaagtgtggattcgttgggacgg
gagagttttgacctagctgtgttggttcaggaccgcggggcgtctacccgtctctccact
cgtgccgttcttcatatcctgttacgcgaccactccgagagtcacattgtcctaccttct
gattctggcagccaggccccacttgacctctccatgatcattatcatctctctgggcgct
atctgcggtgtgctgctgctcgtcatggtcttgtttgcgacacgctgctctagagaccag
aaggacccacgccactcatacaactgccgtgtggcagagtccacttaccagaaccacccc
aagaaaccggccaggcagatccacaagggtgacatcacactggtgcccactgtgaatgga
acactgcctgtgagggcacatccacgctcaccttcagggtctccggcacctgacagcagg
cacagccaccacagccgtcagtcactcaacagccttgtcaccatctcctccaatcatgtg
ccagaaaacttcgctttggagcttgctcatgccacaccacctgtggagcaagtctcacag
cttctgtccatacttcatcagggccagtaccaacccagaccgagtttccgtggcaacaaa
tacactcggagctacaggtatgcgctgaatgagatggataagttcagcctgaaggacagt
ggccgaggggacagtgaggccggagacagtgactgtgagatgggaagagagtctccattg
ctgggagagggattcggtgaggtcttcactcctgatggacagcaccgaccacacccagcg
atgaagctgtgtacggaagagtgtcgcgtcctgggccattccgatcagtgctggatgccc
ccactgacctcacaggctacagccgattaccgaagcaacctttacattccaggtgaggat
cctcagcaggctcccgcccctgaaactacccaatcaggagagtccaccctgaagaagaaa
agcttctctactttcggtaaagagagcgaggaagaggaagggcaagagggcgaagcagag
aaaggagaggacctttgcgggaccacatctcttctctcagagatgaacagtgttttccag
aggctcctcccctcatcactggatgcctacactgagaccaatgagacagagagagtgcct
gtggggacggggtcacttgaacggaggaagggtcacctgccaggtaaagcgaatgccgcc
tcggcctatcagcatggcgtagcagcctgggccgccaacacgcatttccagaacccaggt
cacggccacgcgcccgccagtcacatgtctacctcactggcggctccgcctcttgccgca
cctctatccatgtcagcttcctgttcaaaatggctgccggcaatggaggagattccagaa
aaccacgaagaggatgagctggagtcggtgctgcatggcaaacgttgcgagagccgcagc
gagatcatggacgccagcgagcttgtcgcagagattaacaaacttctacaggacgtgcgg
caaagctag
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