Pangasianodon hypophthalmus (striped catfish): 113547354
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Entry
113547354 CDS
T05759
Symbol
rnf38
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113547354 (rnf38)
Enzymes [BR:
phyp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113547354 (rnf38)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113547354 (rnf38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-C3HC4_2
VPS18_RING_C
zf-RING_UBOX
zf-RING_16
zf-RING_5
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
113547354
NCBI-ProteinID:
XP_026803451
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MPIAATGAPPATPEPRVRPRAPAGAERVPKRAPEGEYGAPEAALVADRLPSVLGVSASSA
ATSLPSHPSHPSHPSPPALSPQLMATEPPRTRSRSRSGFYQSAGANGGAGSSGANLHHHH
LHHHQQQQQQHQHQQLSGACAVLGAHGHPENLRPPAGMLSPSGHRHPGPGAHRSPGGAGA
MGGVYHYHSEPSCADATDKTEDSPSPKRQRLSQQSVLELASAPPSTPSPPIRPWELPPSR
RPHPYPHSHYHSERCHTPARHRRSPPARRQRARRDRLSRLHHGSPGGPQDENYRHPPHPH
THPLHSYGPAVPPHPPAGTDEPRAFHPPALSPRLLHPQQQGTVVMDLHEQLPQGTVPVSY
TVSPVAAHALPPPLCTGQHIPACSSQQQVPACSVVFSSQQHYPVCPPPMLPACSVQHLPV
PYAFPSLLSSDSAFLLHPPHHLSHHHHPPHLAPPTHFLPFQTQQSRSPLQRIENEVELLG
DHLPVGGSFNYAHSGHPSPLPPSTPLQFLSHDPLPQELFGVPYPHFMPRRLTGRRYRSQQ
AVAPPTYHPSLLPYFLSVLPVQPTAVGPAISLELDVDDGEVENYEALLNLAERLGEAKPR
GLTKADIEQLPSYRFNPSNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKN
TGFPVSRLLSSLIGCKCSRVIGQEAP
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcgcggctactggtgcgccgccagcaactcccgagccccgtgtgcgtccccgc
gcccctgccggcgccgagcgtgtgcccaagcgcgctccagaaggcgagtacggcgccccg
gaggcggccctagtggcagacagactacccagcgtgctcggcgtttccgcctcctcagca
gccacttctctcccttctcacccttcacacccttctcacccttctcccccggcgctctcg
cctcagctcatggccaccgagccgcccaggactcggtcccgctcgcgctccggattctat
cagagcgccggcgcaaacggcggcgcagggagttcaggcgcaaacctccaccatcatcat
cttcatcatcatcagcaacagcagcagcagcatcagcatcagcagctcagcggcgcatgc
gcagtgctcggcgctcacggacacccggagaacctgcggccgcccgccggcatgctttcc
ccgagcggacaccggcatccaggtcccggagcgcacaggagcccaggaggagcaggagcg
atgggaggagtgtatcactatcattccgagccgtcctgcgcagatgccacagataagacg
gaggactcccccagtccgaaacgccagcggctttcgcagcagtctgtgctagagctggcc
tcggccccgccctccacgccttcgccgcccatcagaccgtgggagctcccgcccagtcgt
agaccacacccctatcctcactcacactaccactcggagcgctgtcacacacccgccagg
cacagacgcagccctccggcgcggcgtcagcgtgcccggcgcgatcgcctctctcggctc
catcacggttcccctggcggcccccaggacgagaactaccgccaccctcctcaccctcac
acacaccctcttcactcgtacggccccgccgtgccccctcacccgccggcaggcaccgac
gagccccgcgccttccaccctcctgctctgtcgccacggttactgcatccgcagcagcaa
ggcaccgtggttatggacctccacgagcagcttcctcagggtacagtccccgtatcgtac
accgtgtctccggtggcagcccacgccctcccgcctcctctctgtacgggacagcatatc
ccagcatgctcctctcagcagcaggtccccgcctgctcagtggtcttcagcagccagcag
cactaccctgtctgcccacctccgatgctgcctgcgtgttcggtgcagcacttacccgtg
ccgtacgcgtttccgtcactgctttccagcgattcggccttcctactccacccgccacac
cacctctcgcaccatcaccacccgcctcacctggccccgcccacacacttcctgcccttc
cagacacaacagtcaagatcaccactacagaggattgagaatgaggtggagctgctcgga
gatcacctgccagtaggaggcagctttaactacgcccactcgggccaccccagccccctg
cctccgtccacaccgttgcagttcctctctcacgatcccctgccacaggagctcttcgga
gtgccgtatccacacttcatgcctcgacgcctcacgggtcggcggtatcgttctcagcaa
gccgtggcgccgcccacgtatcatcccagcctccttccatacttcctatctgttcttcca
gtgcagcctacagcagtggggcctgctatcagcttagagctggacgtcgatgatggagaa
gtggagaattacgaggctctgttgaacctcgccgaacgtctcggggaagccaaaccacgc
ggcctgacaaaagctgacatcgaacagctgccttcctacagattcaaccccagcaaccac
cagtccgagcaaaccctgtgtgtggtgtgcatgtgtgacttcgagtcccgacagctgctc
cgagtcctgccctgcaatcacgaattccacgccaagtgtgtcgacaaatggctcaagaac
actggcttcccggtctcacgtctgctctcgtctctcattggctgcaaatgctcgcgtgtg
attggtcaggaggcgccttaa
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