Pangasianodon hypophthalmus (striped catfish): 113547445
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Entry
113547445 CDS
T05759
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113547445 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113547445 (bard1)
04121 Ubiquitin system [BR:
phyp04121
]
113547445 (bard1)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113547445 (bard1)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113547445 (bard1)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113547445 (bard1)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
113547445 (bard1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113547445 (bard1)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113547445 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
DUF6615
Ank_KRIT1
zf-RING_10
ANK_LRRK2
RTT107_BRCT_5
AP3D1
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
113547445
NCBI-ProteinID:
XP_026803592
LinkDB
All DBs
Position
Unknown
AA seq
737 aa
AA seq
DB search
MASDPETESDKGMWVKTREAMAHFRKLLLCSKCSNILSEPVCLGICEHVLCRSCAGPHVG
DGCSVCLSPAWVKDVHINRQISNITQLFLQLEAVLCPSESSEPPTDSSAPSTEPAILTKK
KNFKIWFSPKSRKVRCRVENPSDSNPLAPERSDSSVLSVFNFTSSSQDSGSSTPPRARGG
TERKEKKKKKKERKKRKSMVRKQVRGSRVQSKEKKMRLEAVNQQWGIGKDGTVENEEDSA
NQNEARSGKRVSFQCPRAEQDVEVPQDEKIVLSPTRRRSILKDGTEKTPDQALSEIQQHS
SPKRSRPQGGSPQSTPKRPRLSPGQRVRRRRRSGPSPDTSPYSSIPERSVEERKGKETPG
SSPATGRSQTSPAYMKRNHKGETRLHLAAIKGDVELTRSLLEQGADPNLKDHAGWTPLHE
ACNLGHVGVVEVLLQQGALINTPGYENDSPLHDAVRNGHAAVAKLLLEHGASTTVLNTFG
LRPVDYAETPEMREVLSLVPEAPHLGTTPVSSPANLSKSPALMRKDVQATLIGSKLTAAQ
QNQLTKAARVLGGKRVETFSSAVTHVVVPDGAMPSTLTVLQGILNGCWVLTFTWLAECLQ
QGRWLEESEFEAGEGPQRARVNRVSLLPPLFNGCFFYLLGSFHKPPRDELVRLVRAGGGQ
LLSRQPKADSDVTQTVMAAAYHAQPDSDQAFCTHYVLYDSQSSSRPGPVRLGKVWSAPSS
WLLDCIRAFSLLPVPEL
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgatcctgaaacagagtcagataaagggatgtgggttaaaactcgagaggcc
atggcacatttccggaagctacttttgtgctctaaatgctcgaacatcctgagtgagccg
gtgtgtctgggaatctgtgagcatgtgttgtgcaggtcgtgtgcaggtcctcatgtggga
gatggctgcagtgtgtgtctcagtcccgcctgggtgaaagacgtccacattaacagacag
atcagtaacatcacgcagctcttcctgcagctagaggctgtgctctgtccctctgagagc
tcagagcctcccactgattcttcagcaccctcgacggaacccgctatcctcaccaagaag
aagaacttcaagatctggttcagtccaaagagccgtaaagtgcgctgtcgagtggagaac
ccatcagactcgaatccgttggcgccagagcgctctgactccagcgtcctgtccgtcttc
aacttcacctcctcctctcaggattcgggctcctccacacctcccagggcgagaggaggc
actgaacggaaagagaagaagaagaagaagaaagaacgaaagaaacgaaagagcatggtt
aggaagcaggtccgaggctccagggttcagagtaaggaaaagaagatgaggctggaggcc
gtgaaccagcagtgggggattgggaaggatggtacggtggagaacgaggaggattcagcg
aaccagaacgaggcgaggagcgggaagagggtgtccttccagtgtccaagagctgaacag
gacgtggaggttcctcaggatgagaaaatagtcctcagtccaacgaggaggaggagcatc
ctgaaggacgggacggagaagacacctgatcaagctctctctgagatccaacaacattct
tctccaaaaagatccagaccacaaggtggaagcccacagagcaccccgaagcgtcccaga
ctatctccaggccagagggtgaggaggaggaggagatcaggtccatctccagacacctct
ccgtattccagcattcctgaaagatctgtagaggaaaggaaagggaaggaaaccccaggg
agctctcctgccactgggaggagtcagactagccccgcctacatgaagaggaatcataaa
ggagagacgcgtctgcacctcgccgccattaagggtgacgtggagctgacgagatcgctc
ctggagcagggagccgaccccaacctgaaggaccacgctggctggaccccactgcatgag
gcgtgtaacctgggtcacgtgggtgtggtggaggtgctgctccagcagggggcgctgatt
aacacgcccggctacgagaacgactctcctttacacgacgctgtgaggaacggccacgct
gctgtcgccaaactgctgctggagcacggagcctcaaccactgtactgaatacatttggc
cttcgacctgttgattacgctgagactccagaaatgcgagaggtcctaagtttggttcct
gaggcacctcatctgggaaccacgccagtgagctctccagcaaatctgtccaagtctcca
gcgctgatgaggaaggatgttcaggccactctgattgggagtaaactgacagcggctcag
cagaaccagctcaccaaagcagctcgagtcctgggaggaaaacgagtcgagactttctcc
agcgcagtcacacatgtggtagtgccggatggtgccatgccctccaccctcaccgtcctg
cagggaatcctgaacggctgctgggtcttaacattcacatggctggccgagtgtctgcag
cagggccgttggctagaggagagcgagttcgaggcgggcgagggtccacagcgggctcga
gtgaacagagtcagtctgctgcctcctctcttcaacggctgcttcttctacctgctcggc
tctttccacaagcctccgagagacgagctggtgcggctggtgagggcaggaggaggccag
ctgctcagccggcagcccaaagccgacagcgacgtgactcagacggtgatggcggcggcg
tatcacgctcagcccgactcggatcaggcgttctgcactcactacgtcctgtatgactcg
cagagctcgagcagacccgggccggtccgtctgggcaaagtgtggtcagctccttcttca
tggctgctggactgcatcagggccttcagcctccttcctgtccccgagctctga
DBGET
integrated database retrieval system
