Pangasianodon hypophthalmus (striped catfish): 113547615
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Entry
113547615 CDS
T05759
Symbol
shoc2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_9
LRR_13
LRR_At5g56370
LRR_5
Motif
Other DBs
NCBI-GeneID:
113547615
NCBI-ProteinID:
XP_026803826
LinkDB
All DBs
Position
Unknown
AA seq
580 aa
AA seq
DB search
MSSALGKDKDCKEKEAKALTGKERDKEPKAPASLGKEGKEPKTKGKDAKDGKKDASGAPP
AVAFSVDNTIKRPNPATGTRKKSSNAEVAKELVKCRDENSTRLDLSKRSIHLLPSSIKEL
TLLTELYLYSNKLQSLPAELGCLSGLVTLALSENSLTSLPDSLDNLKRLRMLDLRHNKLR
EIPAVVYRLTSLTTLYLRFNRITAVEKDIRNLSKLTMLSIRENKIKQLPAEIGELCNLIT
LDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETIGNLSSINRLGLRYNRLSAIPRS
LAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNM
EHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDIC
GLASLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQ
LTTLPRGIGHLTNLTHLGLGENLLQHLPEEIGTLENLEELYLNDNPNLHGLPFELALCSK
LSIMSIENCPLSQLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgctttaggcaaagacaaagactgcaaagaaaaggaggccaaagcgctcacg
gggaaggagcgcgacaaggagcccaaggcgcccgccagcctcgggaaggagggcaaggaa
cccaaaaccaaagggaaagacgccaaagatgggaagaaggacgcgagcggcgcgccgcct
gctgtcgctttctccgtggacaacacgataaagcggccgaacccggcgacgggcacgcgc
aagaagtccagcaacgccgaggtggccaaggagctggtcaaatgccgcgatgagaactcg
acacgcctggacctgtccaagcgctccatccatctgctcccgtcatccatcaaggagctg
acgctgctcaccgagctctacctgtacagcaacaagctgcagagcctcccggccgagctg
ggctgcctctcgggcctggtgacgctggccctgagtgagaactcgctcaccagcctgccg
gactcgctggacaacctaaagaggctgcgcatgctcgacctgcggcacaacaagctgcgg
gagatcccggccgtggtgtaccgcctcacgtctctcaccacactctacctgcgcttcaac
cgcatcaccgccgtggagaaggacatccgcaacctgagcaagctcaccatgctgagcatc
cgcgagaacaagatcaaacagctgcccgccgagatcggagagctgtgtaacctgatcact
ctggacgtggcccacaatcagctggagcaccttcctaaagagatcggcaactgcacgcag
atcaccaacctggacctacagcacaacgagctcctggacctccccgagactatcggtaat
ctgtcgagtataaaccgtctggggctgcggtacaacaggctgtcggcgatcccccggtcg
ttagcgaagtgtcgggagctggaagagttaaacctcgagaacaacaacatctccgtgctg
cctgagggtctgctctcgagcctggtgaacctgacgagtctgacgctggcacgcaactgt
tttcagtcgtaccctgtgggcggcccgtcgcagttctccaccatctactcgctgaacatg
gagcacaaccgcatcaacaagatccccttcggcatcttctcacgcgccaaagtcctcagc
aagctcaacatgaaggacaaccagctgacgtcgctgccgctggacttcgggacatggacc
agcatggtggagctgaacctggccaccaaccagctgactaagatccccgaggatatctgc
ggcctcgcttccctcgaggtcctcatattgtccaataacctactgaagaagttacctcac
gggatcgggaacttgcggaagctgcgtgagctcgacctggaggagaacaagctggagtcg
ctcccgaacgagatcgcctacctgaaagacctacagaaactcgtgttgaccaataatcag
ctgacgacgttgccgagagggatcggtcacctgaccaacctgactcacctgggactggga
gagaacctcctgcagcacctgcccgaggagatcggcactctggagaacctggaggaactg
tacctgaacgacaaccccaacctgcacggtctgcccttcgagctggcgctgtgcagcaag
ctgtccatcatgagcatcgagaactgccctctgagccagctcccgccgcagatcgtcgcc
ggcggcccgtccttcatcatccagttcctcaagatgcagggcccgtaccgcgccatggtc
tga
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