Pangasianodon hypophthalmus (striped catfish): 113547663
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Entry
113547663 CDS
T05759
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113547663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113547663
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113547663
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
113547663
NCBI-ProteinID:
XP_026803912
LinkDB
All DBs
Position
Unknown
AA seq
564 aa
AA seq
DB search
MSAEEAEKTTTTTTAAAEAPAGDEEEEWLYGDEGETKETEEEEAKLNAAVSAPSAPAAPE
ENSTGNGVASQEEAQGDNEDSESDSDDDDDDVRVTIGDIKTGAPQYTSYGAAPVNLNIKT
GGSRPYGAVGAKVKGVDLDAPGSINGGPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQKRLRMGLDNINISSATSKISVQQGRTGNDKEAALPAHVAKTDFTSPSNLYK
TGLNPARISPPQWAGPASQDTPYYTKSTGTIDVIGGQTATISRVEGRRRHNLEGNNIQVI
SEHTTSEAEATPAKIPAFFPPGPLPPNMPPPPFLPPPPVSQAPPLIPPPRLPITVPPPGF
PPPPTGPPPSLMPTLDNSGHPGGYDCRPVTPYPFPPGGYPPPMQGPVNNWAGMMDNSKQW
DYYPRREKEREKERERERTRDRGHDREREREREHSPSSMAYNSSLSLTHSDEERYRYRDY
GDRGYERHRERSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKS
KRSKEGKEPSEERAADQENQEAME
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaagaagcggagaaaacaacaacaacaacaacagcggcggcggaggctcct
gccggggatgaggaggaggaatggctgtacggcgatgaaggagaaaccaaggagacagag
gaggaagaggccaaactcaacgccgctgtcagcgccccctctgctcctgcagcccccgag
gagaacagcactggaaatggagtggccagtcaggaggaggcgcagggtgacaacgaggac
agcgagagtgacagcgatgacgacgacgatgacgtccgcgtcaccatcggcgacattaag
acgggcgcgcctcagtacacctcgtatggagcggcgccggtcaatctgaacataaagaca
ggtggcagcaggccatacggagcagtgggcgcgaaggtgaaaggtgtggatctcgatgcc
ccaggcagcatcaatggcggccccgtgctggaggtggacatggagtccttcgaggaaaag
ccctggagaaaacccggtgctgacttgtcggactactttaattatggctttaatgaggaa
acttggaaggcgtactgtgagaagcagaagcggctgcgtatgggcctcgacaacatcaac
atcagctctgctaccagcaagatttctgttcagcaaggcaggacagggaacgataaagag
gctgcacttcctgctcacgttgctaaaacagactttacctccccatctaacctgtacaag
acaggcctgaacccggccaggatatcccctccgcagtgggcggggcctgcatcccaagac
acgccctattatacgaagtctactgggaccatcgatgtgattggtggacaaacagccacc
atcagcagggtggagggacgacgccgacacaatctggagggaaacaacatccaggtgatc
tctgaacacaccacctccgaagcagaggccacgcctgccaaaatccccgccttcttcccc
ccagggcccctccctcccaacatgccaccacctcctttcctgcctccgccccctgttagc
caggctccgccccttatccctccaccaagactcccgatcaccgtccctcctcctggtttc
ccgcctcctcccactggcccgcccccttcactcatgccaacgttagacaacagtgggcat
cctggaggatacgactgccgtcctgtcactccgtatcctttcccaccaggtggttatccg
ccacccatgcaggggcctgtgaacaactgggcggggatgatggacaactcaaagcagtgg
gattattatccccgccgagagaaagagcgagagaaggagagagagagggagaggacgagg
gaccgaggacacgaccgggaaagagagagagagcgagagcatagtccctcatccatggcc
tacaacagctctctctctctcacacacagtgatgaagaacgctaccgttaccgtgactac
ggagaccgcgggtatgagaggcatcgggagcggtcgagccgagagaaagaggagagacac
cgtgagaggaggcacagagagaaagaggagggaaggcacaagtcctcacgcagcagtagc
agaaggaggcacgacagtgaggaaggtgacggccatcgcagacacaaacataagaagtct
aagaggagtaaagaaggcaaagagccgagcgaggagcgagcagccgaccaggagaaccag
gaggccatggagtaa
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