Pangasianodon hypophthalmus (striped catfish): 113547679
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Entry
113547679 CDS
T05759
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04140
Autophagy - animal
phyp04148
Efferocytosis
phyp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113547679 (vps18)
04148 Efferocytosis
113547679 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
113547679 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113547679 (vps18)
Membrane trafficking [BR:
phyp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
113547679 (vps18)
Hops complex
113547679 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_16
zf-C3HC4_2
zf_RING_Vps8
zf-RING_Vps41
zf-RING_5
zf-RING_11
zf-ANAPC11
zf-RING_2
zf-RING_UBOX
zf-rbx1
DUF2175
DUF5600
zf-C3H2C3
KNOX2
zf-C4H2
AceK_regulatory
Motif
Other DBs
NCBI-GeneID:
113547679
NCBI-ProteinID:
XP_026803938
LinkDB
All DBs
Position
Unknown
AA seq
978 aa
AA seq
DB search
MATILDDYEDSQMIRHPVQPRRLPVASMIGITHSGFVNARLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLGKPDQLNQIELGRKDDSKVHKLFLDPTGSHLVISL
TTSECVYLNRNTQKVRSLSRWRGHLIESVGWNKILGNETNTGPVLVGTSQGIIFEAEISA
SEGTLFNTNPDQYFKQVHSLEEDGKPAPVCCLDVERGIESKYFIIATTRKRLFQFVGKLA
EGSEQQGFSSIFAQNQDLCPSFQEFPVNMGYSEIGFYTSKLRSSPNSFAWMMGNGVLYGH
LDYSRPDSLLSDVQVWEYTSEIDFRYNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DIFPDKFGPLKKMIKDPVGGLVWIYTEKAVFRYHIQRESRDVWQMYMSMKKFDLAKEYCR
DRPDCKDMVLAKEAEHWFQNQRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLRK
LENLKPNENTQITLLITWLTELYLNRLGQLEADDIDGTLFQETREEFRHFLSNHKRKECF
YNNRSTIYDLLASHGNVKDMVYFSVIMQDYERVISHHCQHDDYTAALDVLSKHCDEKLFY
KFSPVLMQHIPKKVVDAWIQMGSRLDPKQLIPALVNYSQIGSTQQINETIRYMEFCVHEL
NVKEEAIHNYLLSLYAKYKPDSLLWYLEQAGMHASEIHYDLKYALRLCAEHGYLQACVLV
YRIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICLSLEDYNHHIEELKQEMEEATESARRIRQD
IQEMRNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLSAYKQSKLE
ELQKKLAAATQTTKSRHRPKEEDAVSLGKGQGSREQIKSDIDDIVASECAYCGELMIKSI
DKPFIDPHRFEEEMSSWL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcgactatcctggatgattatgaagactctcagatgatcagacacccggttcagccc
agacgccttcctgtggccagcatgatagggataactcactcaggatttgtgaacgcgagg
ctggaggaagaaaagccgatcttcaacaagcagcggatcgatttctcgccgcctgaaaag
atcaatcacttcgcagtgtgcaacaaccagctgtgcatgagtctggggaaggacactctg
ctgaggatcgatctggggaaaccggatcagctgaaccagatcgagctgggaaggaaggat
gatagtaaagtacataaactgtttctggatccgacaggatctcacttggtgattagtctg
accacaagcgagtgcgtctacttgaatagaaacacacagaaggttcgcagcctctctagg
tggaggggccacttaatagagagcgtgggctggaacaagattttaggcaatgaaacaaac
accggcccagttcttgtcggaaccagccaaggcattatttttgaggcagaaatctctgct
tctgagggtacccttttcaacaccaacccagatcagtacttcaagcaggttcattccttg
gaagaggacggaaagccagcaccggtctgctgccttgacgtggaacgtgggatagagtca
aagtacttcattattgccaccactcgcaaacgtctctttcagtttgtcggcaagttagcc
gagggttccgagcaacaaggcttcagctcaatctttgctcagaatcaggatctttgtccg
agctttcaggagtttcctgttaacatgggctacagcgagatcggcttctacacctccaag
ctccgttcaagccctaattccttcgcctggatgatgggaaatggggttttgtatggccac
ttggactactcgcggcctgactctcttctcagcgacgtccaggtgtgggaatacacctcg
gaaatcgatttcagatacaacaagccgatctccatcgtactcacccagtttcatttcctt
ctcctgctccctgatcgcgtcaaggccatctgcaccttgaacggacaagtcgtctacgaa
gacatcttcccggataagtttggccccctcaaaaagatgatcaaagatcccgtcggcgga
ctggtgtggatctacaccgagaaagccgtcttccgctatcacatccagagggaatctaga
gacgtctggcagatgtacatgagcatgaagaagtttgacttggccaaagagtactgcagg
gatcgaccagattgcaaggatatggtgcttgccaaggaagcagagcactggttccagaac
caacgttatctagagagcgcaaagtgctacgctctgactcagaactactttgaagagatt
gcgctgaaattcatcgaagccaagcaggaggaggctctgaaggaattcctgctccgaaaa
ctggaaaacctcaaacccaatgagaatactcagatcacgctgctcatcacctggttgact
gagttgtacctgaaccgtctcggacaactggaagcggacgacatagacggcacgctgttt
caggaaacgcgtgaggaattccgtcacttcctgtctaaccacaagcgcaaggagtgcttc
tacaacaaccggagcaccatctacgatcttttggcaagccacggcaatgtcaaagatatg
gtctacttttctgtcattatgcaggactacgagagagtcatctctcaccactgccagcat
gacgactataccgcagcactcgacgtcctctccaagcactgcgacgaaaagctgttctac
aagttctccccggttctcatgcagcacattccaaagaaagtcgtggacgcctggatccaa
atgggcagccggctcgatcccaagcagctgatcccggcgctggtgaactacagtcagatc
ggcagcacccagcagatcaacgagacgatccgttacatggagttctgcgtgcacgagctc
aacgtgaaggaagaagccatccacaattatctgctatctctctacgccaagtataagccc
gattctttgctgtggtaccttgagcaggcgggaatgcacgcctcggagatccactacgac
ctgaaatacgccttacgcctctgtgctgaacatggctatctccaagcgtgcgtgttggtc
tacaggataatggagctgtatgaagaagctgtggatttagccttgcaggtggatgtcgat
ctggccaagtcgtgcgccgacctccccgaggacgacgaggagctgaggaagaagctgtgg
ctgaaaatcgcccgtcacgtggttcaggaggagaaggatgtgaagaaggcaatgaactgt
ctctccagctgcaacctgctgaagatcgaggacatcttgcctttcttcccggacttcgtc
accatcgaccacttcaaggaggcgatctgcctctcgctggaggactacaaccaccacatc
gaggagctcaagcaggagatggaggaggccacggagagcgccaggcgcatccgccaggac
atccaggagatgaggaacaagtacggcgtggtggagtctcaggagaagtgcgccacctgt
gacttccccttactcaaccgacccttctatctcttcctgtgcggacacatgttccattac
gactgcctcttccaggaggtcacgccacacctctcggcgtacaagcagagcaagctggag
gaactgcagaagaagctcgccgccgccacgcagaccaccaaatctcgccaccgacccaag
gaggaggacgcggtgagcctggggaaaggccagggcagccgagagcagatcaaatcggac
atcgacgacatcgtggcgtccgagtgcgcctactgcggcgagctgatgatcaaatccatc
gataagcctttcatcgatccgcacaggttcgaggaagaaatgtccagctggctctga
DBGET
integrated database retrieval system
