Porphyrobacter sp. HT-58-2: CHX26_08650
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Entry
CHX26_08650 CDS
T05364
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
phz
Porphyrobacter sp. HT-58-2
Brite
KEGG Orthology (KO) [BR:
phz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phz03016
]
CHX26_08650 (rnd)
Enzymes [BR:
phz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CHX26_08650 (rnd)
Transfer RNA biogenesis [BR:
phz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CHX26_08650 (rnd)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AUX69550
UniProt:
A0A2L0GK02
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Position
complement(1817819..1819030)
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AA seq
403 aa
AA seq
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MKIHPLITTTEALSDLCGRLAKSDFVAVDTEFMRENTYWPELCLVQIANTEEAAAIDPMA
PGIDLAPLLDLMCNNEDVLKVFHAGGQDVEIIVNLTGKTPHPIFDTQIAMMAISQSEQIG
YANLVETWVGLTIDKGARFTDWSRRPLTDRQIEYAIGDVTHLSAIFPKILKKLIKTGRGG
WLDAEMEKLADPSNYLTDPGLAWKRIRQPGRNPQVLGRMKALAAWRESEAQHKNIPRGRI
MRDETLADIASHPPKAQADLAKVRGLSPAWKDNDIGKRLMKVLAEAEPLPKDEMPEKIKH
GAPLGKEGALVADLLKLLLKIRAREIDVAPRLLTRAEEMESLAAGVRNLPVLQGWRYEVF
GKDALDLVEGKLAFAVEKGRLKMTHIDDVVMPQAPEAGALAAE
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatccacccgctgattaccacgaccgaggccctctccgacctctgcggccgcctc
gccaaatccgatttcgtcgcggtcgacaccgaattcatgcgcgagaacacctattggccg
gaactgtgcctggtgcagatcgccaataccgaagaagccgccgcgattgatcccatggcg
ccggggatcgaccttgcgccgctgctcgatctgatgtgcaacaatgaagacgtgctcaag
gtctttcatgcaggcgggcaggatgtcgagatcatcgtcaatctgacgggcaagaccccc
caccccatcttcgacacccagatcgcgatgatggcgatcagccagtcggaacagatcggc
tatgccaatctggtcgagacatgggtcggcctcaccatcgacaagggcgcacgcttcacc
gattggagccgtcgtccactgaccgaccggcagatcgaatatgccattggcgatgtgacg
catctttcggccatcttccccaagatcctcaagaagctgatcaagaccggccggggcggg
tggctggatgccgagatggaaaagcttgccgatccgtcaaactacctcaccgatccgggc
cttgcatggaagcgcatccgccagccggggcgcaacccgcaggtgctgggccggatgaag
gcgctcgccgcgtggcgcgaaagcgaggcgcagcacaagaatatcccgcgcgggcgcatc
atgcgagacgagacgctggccgacattgccagccacccgcccaaggcacaggccgatctg
gccaaggtgcgcgggctttccccggcgtggaaggacaatgacatcggcaagcgcctgatg
aaggtgctggccgaggccgagccgctgcccaaggatgaaatgcccgaaaagatcaagcat
ggcgcgccgctgggcaaggagggcgcgctggtcgctgacctgctcaagctgctgctgaag
atccgcgcccgcgagatcgatgtggccccgcgcctgctgacccgtgccgaggagatggaa
tcgctcgcggcaggagtgcgcaacctgccggttttgcagggctggcgttacgaagtgttc
ggcaaggacgctctcgatctggtcgagggcaagctcgccttcgcggtcgagaaggggcgg
ctcaagatgacccatatcgatgatgtggtgatgccacaggcacccgaagcgggcgcgctg
gcagcggaatag
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