Porphyrobacter sp. HT-58-2: CHX26_10595
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Entry
CHX26_10595 CDS
T05364
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
phz
Porphyrobacter sp. HT-58-2
Pathway
phz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CHX26_10595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phz03021
]
CHX26_10595
Transcription machinery [BR:
phz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CHX26_10595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
Motif
Other DBs
NCBI-ProteinID:
AUX69876
LinkDB
All DBs
Position
complement(2253612..2255642)
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AA seq
676 aa
AA seq
DB search
MAEKEDAPLIDLNEASIKKLISKAKKRGYVTYDELNEALPSGEMSPDQIEDIQTALSEMG
VQIVESDEEAEAEAEGEESEAEELGSDDDDDEDDDGEKKGPAKDARAGNKKLATGERTDD
PVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMIMGLCESPITFHAIIQWSEALNNGDM
QLREILDLDAMLSKEPPAEKMAEGAEDDDDDEISEATAGPTIREDDEVEEEPEENDEDED
GEPRAKREEDEEEDNTLSLAQMEAALKPEALERFARITTLFNAFEKLQAERVETLAAGND
FPAAKEKKYESLSEELTAEVESVQFHATKIEFLVDNLYAFNRRLTTLGGQMLRLAERHKI
KRVDFLGAYVGNEMDDAWIKERAKKDKKWAAFLEREEDAIERIRAEIADIAAQTGMSLNE
FRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEEGRE
PTPEEMAARLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQ
ANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK
LKHPSRSRKMRSFLDQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggccgagaaggaagatgccccgctgatcgacctcaatgaggcttcgatcaagaagctg
atcagcaaggcgaaaaagcgcggctatgtcacctacgacgagctgaacgaggccctgccc
tccggcgagatgagccccgaccagatcgaagacatccagactgccctgtccgaaatgggc
gtgcagatcgtcgaaagcgacgaggaggccgaggccgaggcggagggcgaggaatcggaa
gccgaggagcttggctccgacgatgacgatgacgaggatgatgacggcgaaaagaagggg
cccgccaaggatgcccgcgccggcaacaagaagctcgccacgggtgagcggaccgatgat
ccggtgcgcatgtacctgcgcgagatgggcgctgtcgaactgcttagccgcgagggcgaa
atcgccatcgccaagcggatcgaggccgggcgcgacatgatgatcatggggctgtgcgaa
agcccgatcaccttccacgccatcatccagtggtccgaagcgctcaacaatggcgacatg
cagctgcgcgagatcctcgatctggatgcgatgctctccaaggaaccgccggccgagaaa
atggccgaaggcgccgaggatgacgacgacgacgaaatctccgaagccaccgccgggccg
accatccgcgaggatgacgaggtcgaggaagagcccgaagaaaatgacgaggacgaggac
ggcgagccccgcgccaagcgcgaagaggacgaggaagaggacaacaccctttcccttgcc
cagatggaagccgcgctgaagcccgaggcgctcgaacgtttcgcgcgcattaccacgctg
ttcaatgcctttgaaaagcttcaggccgaacgggtcgaaacccttgcggcgggcaatgat
ttcccggctgccaaggaaaagaagtacgaatcgctcagtgaagaactcaccgccgaagtc
gaaagcgtgcagttccacgcgaccaagatcgaatttctggtcgacaatctctacgcgttc
aaccgccggctgacgacgctgggcggtcagatgctgcgtctggccgagcgtcacaagatc
aagcgcgtcgatttcctcggggcctatgtcggcaacgaaatggatgacgcctggatcaag
gagcgcgcgaagaaggacaagaagtgggccgccttcctcgaacgcgaggaagacgcgatc
gagcgcatccgcgccgaaatcgccgatattgccgcacagaccggcatgagcctcaacgag
ttccgccgcatcgtgaacatggtgcagaagggcgagcgcgaggcacgcattgccaagaag
gaaatggtcgaggcaaacctgcgtctggtgatttcgattgccaagaaatacaccaaccgc
gggttgcaattccttgatctcattcaggaaggtaacatcggcctgatgaaggcggtcgac
aagttcgaatatcgccgcggttacaagttcagcacctatgcgacatggtggatacggcag
gcgatcacgcgttcaatcgccgatcaggcgcgcaccatccgcattccggtgcacatgatc
gagacgatcaacaaactggtgcgcacctcgcgccagttcctccatgaagaaggccgcgag
ccgacgccggaggaaatggccgcgcggctttcgatgccgctcgaaaaggtgcgcaaggtg
atgaagatcgccaaggagccgatcagcctcgaaacccccatcggggacgaggaagacagc
cacctcggcgatttcatcgaagacaagaacgcgatcatccccgtggacgcggcgatccag
gcaaacctcaaggaaaccgtgacccgcgtgctggcttcgctgactccccgcgaggagcgc
gtgctccggatgcgcttcgggatcgggatgaacaccgatcacacgctggaagaggtgggc
cagcagttctcggtgacgcgcgagcgtatccggcagatcgaagccaaggcgctgcggaag
ctcaagcatccctcacgcagccgcaagatgcggtcgttcctcgatcagtaa
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