Porphyrobacter sp. HT-58-2: CHX26_12260
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Entry
CHX26_12260 CDS
T05364
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
phz
Porphyrobacter sp. HT-58-2
Pathway
phz03420
Nucleotide excision repair
phz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHX26_12260
03430 Mismatch repair
CHX26_12260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phz03400
]
CHX26_12260
Enzymes [BR:
phz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHX26_12260
DNA repair and recombination proteins [BR:
phz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHX26_12260
MMR (mismatch excision repair)
Other MMR factors
CHX26_12260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
PcrA_UvrD_tudor
Tudor_1_RapA
Motif
Other DBs
NCBI-ProteinID:
AUX70160
LinkDB
All DBs
Position
2602744..2605050
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AA seq
768 aa
AA seq
DB search
MSSNLPSPAPGRDAVPAYAARLNPPQRAAVLATEGPVLMLAGAGTGKTAALTARLAHLVA
TGRAYPSQILCVTFTNKAAREMKERVAHHLGPQAEGLPWLGTFHSICAKMLRRHAELVGL
QHNFTIIDTDDQLRLLKQLITEAELDEKRWPARQLAGLIDRWKNRGMSPADLDAVENEAY
ANGRGTALYARYQERLKQLNACDFGDLMLHILTILRGHPDILADYQRRFRYIMVDEYQDT
NAVQYLWLRLLAQGHRNICVVGDDDQSIYSWRGAEVANILRFEKDFPGAEVIRLEQNYRS
TPHILGAASGLIRANSQRHDKTLWTEVNGGDKVKVIGVWDAPEEARRVGEAIERLEREGA
GLDSIAILVRAQYQTREFEDRFIQIGVNYRIIGGFRFYERAEIRDALAYLRLIAQPQDDL
AFERIHNQPKRGLGAKALEQMHAHARRTGLPLAAAALQLADSDELPKRAAATIGGLMRQF
LHWREQAETLSPADLLRLVLEESGYNAMLSADHSPESAGRAENLSELARAMEEYATLGDF
LEHVSLVMDNERADQGETVTIMTIHAAKGLEFDNVFCVGWEEGVFPSQRAIDEGGLASLE
EERRLAYVAITRAKRHCTILHAANRRIYGQWVSSIPSRFIEELPGEHIDQESTLSGGASL
WRANWREQEDPFAHVARDNPAKAQQRGPGWQRALTSGYETKPARVRENTRSAANFAAPAR
SDIAIGAMVTHAKFGTGCVIDQEGNKLTILFEDAGEKRVLDSFVTVVG
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaacctgccctcccccgcgcccggacgcgatgcggttcccgcctatgccgcg
cggctgaacccgccgcagcgcgcagcagtgctagcgaccgagggcccggtgctgatgctg
gcgggcgcgggaacgggcaagacggcggcgctcaccgcccgccttgcgcatctggtggcg
acgggccgcgcctacccttcgcagattctgtgcgtcaccttcaccaacaaggcggcgcgg
gaaatgaaggaacgcgtggcgcaccatctcggcccgcaggcggaaggcctgccgtggctc
ggcacttttcattcgatctgcgccaagatgctgcgccgtcatgccgaactggtgggctta
cagcacaatttcaccatcatcgacaccgacgatcagttgcgcctgcttaagcaactcatc
accgaggccgagctggacgagaagcgctggcccgcgcgccagctggccggactgatcgac
cgctggaagaaccgcggcatgagccctgccgacttggacgcggtggagaacgaggcctac
gccaacgggcgcggcacagcgctctatgcccgctatcaggagcgtctgaagcaattgaac
gcctgcgattttggcgatctgatgctgcacatcctgaccatcctgcgcggccatccggac
atcctcgccgactaccagcgccggttccgctacatcatggtggacgaatatcaggacacc
aatgcggtgcagtatttgtggctgcgcctgctggcgcagggccacaggaacatctgcgtc
gtgggtgacgacgaccagtcgatctattcctggcgcggggcggaggtcgccaacatcctc
aggttcgagaaggattttcccggcgcggaagtgatccggctcgaacagaactaccgctcc
acgccgcatatcctcggcgcggcttcagggctgatccgcgccaacagccagcgccatgac
aagaccctgtggaccgaggtcaacggcggcgacaaggtcaaggtgatcggcgtgtgggac
gcgcccgaggaagcgcgccgggtaggcgaggcgatcgagcggctggagcgtgagggcgcc
gggctcgacagcatcgccattctcgtgcgcgcgcagtaccagacccgcgagttcgaggac
cgcttcatccagatcggggtgaattaccgcatcatcggcggtttccgcttctacgaacgc
gccgaaatccgcgatgcgttggcctatctgcgcctgatcgcccagcctcaggacgatctg
gcatttgaacgcatccacaatcagcccaagcgcgggctcggtgccaaggcgctcgaacag
atgcacgcccacgcccgccgcaccggcctgccgctcgccgccgccgcgctgcaactggcc
gatagtgacgagctgcccaagcgcgccgctgccaccatcggcgggttgatgcggcagttc
ctgcattggcgcgaacaggccgagacgctgtcccctgccgatctgctgcggttggtgctg
gaggaatcaggctacaacgccatgctttctgccgaccattcgcccgaaagcgccggccga
gcggaaaacctttccgaacttgcccgggcgatggaggaatacgcgacgctcggcgatttc
cttgaacacgtcagcctggtgatggataacgagcgcgccgatcagggcgagacagtcacg
atcatgacgatccacgccgccaagggcctggaattcgacaacgtcttctgcgtcggctgg
gaagaaggcgtgttcccctcgcagcgtgccatcgacgagggcggacttgcctcgctggag
gaggagcgccgcctcgcctatgtcgcgatcacccgcgcgaagcgacattgcaccatcctg
cacgccgccaaccgcaggatctacggccagtgggtgagttcgatcccctcacgcttcatc
gaggagctgccgggcgaacatattgatcaggaaagcacgcttagcggcggtgcgagcctg
tggcgggccaactggcgcgagcaggaagaccccttcgcccacgtcgcccgcgataacccc
gccaaggcacagcaacgcggccccggctggcagcgggctttgacatcgggctacgaaacc
aagcccgcccgcgtgcgcgagaacacccgctcagccgccaacttcgccgccccggcgcgc
agcgacatcgccatcggggcgatggtgacccacgccaaattcggcaccggctgcgtgatc
gatcaggaaggcaacaagctcaccatcctgttcgaggatgcaggtgagaaacgggtgctc
gacagtttcgtgacggtcgtgggttag
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