Pseudoalteromonas issachenkonii: PI2015_0117
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Entry
PI2015_0117 CDS
T04164
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pia
Pseudoalteromonas issachenkonii
Pathway
pia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI2015_0117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pia03019
]
PI2015_0117
Enzymes [BR:
pia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PI2015_0117
Messenger RNA biogenesis [BR:
pia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PI2015_0117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALQ53455
LinkDB
All DBs
Position
I:123734..125011
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AA seq
425 aa
AA seq
DB search
MTKTHLTDKKFSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKT
LAFLTATCHRLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGED
YEKQRAQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMF
RRMPDTSERLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDK
IKLLLTLIEEEWPEKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFS
KGELDFLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQ
YAYNLHEIEEYIEHSIPLSHYDKSALLDDLTKPTIHRKRNFSTGPRNRSNNNGRRPNNGY
QKGRS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgactaagacacatttgaccgataaaaagttttcagactttgctattgcaccggaagtg
gttgccgggttaaccgaaagtgggtttgaatattgcacacccattcaagctaaatgccta
ccgtttatttgtgaagggcgcgatattgcgggccaagcacaaacaggtacaggcaaaacg
ttggcgtttttaaccgccacatgccaccggttattacaatctagcaaagcacctagtaaa
catccaagagccctgatcatggccccaactcgggagcttgcgattcagatacacaaagat
gcaaaaattttagcgccgcactgtaatcttaacttaggtttagtatatggtggcgaagat
tacgaaaaacaacgtgcacaactagaaaaaggcgttgatattttaattggtactacaggt
cgcctaatagatttgtacaagcaaggctgttacacccttaatgaaattgaggtagtcgtg
ctagatgaagccgatcgtatgttcgatttaggctttattaaagatatccgttatatgttc
cgtcgtatgccggatacatcagaacgtttaaacttattattctctgccacactgtcgtat
cgtgtacaagagcttgcatttgaacacatgacaaacccagagcatgtgcaaatagaaccc
gatgtaaaaacgggtaagcgtattcaagaagagctatttcatccttcacaagaagataaa
attaagctgttgttaaccttgattgaagaagaatggcctgagaaagccattgtttttgca
aataccaaacacagctgtgaaactgtgtatgcatggttaaaagcagatggacatcgagtg
ggtatgctcaccggtgatgtaaaccaaaagaaacgtcaatcaatactcgcgcaatttagt
aaaggcgagctagactttttagtggctaccgatgttgctgcgcgtggtttacatattcca
gaagtaagtcatgtatttaactttgacttacctgatgattgcgaagattacgttcaccgt
attggtcgtacagctcgtgcaggcgcttcgggtcatgcaattagctttgcgtgtgagcag
tatgcttataaccttcatgaaattgaagagtacatcgagcacagtattcctttatcgcat
tacgataaaagtgcattgctagatgatttgaccaagccgactattcacagaaaacgtaat
ttttctaccggtccacgtaatcgtagtaataacaacggacgtcgcccaaataatggttac
caaaaaggacggtcttaa
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