Pseudoalteromonas issachenkonii: PI2015_0493
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Entry
PI2015_0493 CDS
T04164
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pia
Pseudoalteromonas issachenkonii
Pathway
pia03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PI2015_0493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pia03400
]
PI2015_0493
Enzymes [BR:
pia01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PI2015_0493
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PI2015_0493
DNA repair and recombination proteins [BR:
pia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PI2015_0493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ALQ53815
LinkDB
All DBs
Position
I:546407..547216
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVEVSRMGITPHVLNQVVTKVNIHNASMRWPVPDEVYQLEGLVVSSIERRAKYLL
LECELGAAILHLGMSGNLRVVNKTEPLKKHDHVEFILANDKALRLNDPRRFGCCLWQAPN
EEHKLLAKLGPEPLTDDFFAKRVYEQSRNKKVPVKQFIMNNAVVVGVGNIYANESLFKAG
IDPRKEAGKVSLKSYQALIPIIKDTLAAAITQGGTTLKDFAQSDGKPGYFAQQLLVYGRK
GQPCVNCDTELTEIRLGQRSTVFCEVCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagtagaagttagccgcatgggcattaccccccatgtgctaaac
caagtcgttactaaggtaaacattcataatgccagtatgcgctggcctgtgccagatgag
gtataccaacttgaggggttggtggttagcagtattgaacgccgcgcaaaatacttgcta
ttagaatgtgagcttggggcggctatattgcacttagggatgtcagggaacttgcgcgtt
gtaaataaaaccgagccacttaaaaaacacgaccatgttgagtttattttagcgaacgac
aaagcactgcgcttgaacgatccgcgccgctttggttgttgtttatggcaagcacccaat
gaagagcacaagctactagctaaattaggccctgaaccactcactgatgacttttttgct
aaacgtgtttatgaacaatcacgtaataaaaaagtgcccgttaagcagtttattatgaat
aacgccgtggtggtgggggtcggtaatatttatgctaacgagtcattatttaaagcgggt
attgaccctcgtaaagaagccggaaaggtaagccttaaaagctaccaagcgttaatccca
attataaaagacactttagccgctgcaattactcaaggcggcacaacgttaaaagacttt
gcccaaagtgacggtaagcctggctactttgcgcaacagttattagtgtatggccgaaaa
ggccaaccttgtgtaaattgcgataccgaattaaccgaaattcgcctagggcaacgcagc
actgttttttgtgaggtgtgtcagaagtag
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