Pseudoalteromonas issachenkonii: PI2015_1205
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Entry
PI2015_1205 CDS
T04164
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pia
Pseudoalteromonas issachenkonii
Pathway
pia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI2015_1205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pia03019
]
PI2015_1205
03009 Ribosome biogenesis [BR:
pia03009
]
PI2015_1205
Enzymes [BR:
pia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PI2015_1205
Messenger RNA biogenesis [BR:
pia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PI2015_1205
Ribosome biogenesis [BR:
pia03009
]
Prokaryotic type
rRNA processing factors
PI2015_1205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Cementoin
DUF7351
Motif
Other DBs
NCBI-ProteinID:
ALQ54513
LinkDB
All DBs
Position
I:complement(1346705..1349938)
Genome browser
AA seq
1077 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GADRHGFLPLKEIARTYFPQGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWEAIQQAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAARPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGVCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETP
HYEVMRLRKDETLETVSYEQVVAPEPEAFEMSKSPAAPVREEPKLKGVVMPSTPAPQAAA
KAAPVVEAKAEIGLFAALGKWIKSLFGSDTEQKSEKLTEKQSQDRPSNNRGNDNRRRNNN
QRRRNNNPRNKSRNERTADTEAKNESAPVNDTQEKNENRNKRRRNSNTRKRPEHKTEDKT
QVKAEATQNADTAVKSDKNADPKEQKPKVRRQRRNLRKKVRVQDESTEQVQTTEQAVEQP
VVKEDKPQVKEQAPVVEKQAPVSDEKAPAPAKEQAEAVVDANDNVATQDEEQEQTRTRSR
RSPRHLRASGQRRRRPEGENAQEKSDEAPAFIPVADQAAAEYEAELKAKAHKTAVDASDA
VEQNIVEEELAKVEEPVKAEEPVKAEEPVKAEEPVKAEEPVKTEEPVQTEEPVKAEEPVK
AEEPVQAEEPVKTEEPVKAEEPVKTEEPVKAEAPVKTEEPVKAEEPVKAEEPVKAEEPVK
AEEPVPAEEVAVEAETAPVSATETPVESKEAPVVENKPKAVSQASSANVNAKTVITAGHA
SAPMAQPTPVADSETKHTSVAMAHDKRELIPDSGLRPGSVKPAGRASSAMTKTLSAE
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcaacgcagcaagaagaaatgcgcgtagcactggttgac
ggccagcgcctatatgatttagatatagaaagcccaggtcacgaacagaaaaaagccaat
atttacaaaggtaaaatcacacgtattgaaccatctttagaagcagcatttgttgattac
ggtgctgatcgtcatggtttccttcctttaaaagaaattgcccgtacttacttcccgcaa
ggttacacctttcatggtcgtccgaatattcgcgacgtgatcaaagaaggtcaagaagtt
attgtacaagttgataaagaagagcgcggccaaaaaggggcagcactgactacctttatc
agcgtggcaggtagttatttagtgcttatgcctaacaaccctcgcgctggcggtatttct
cgtcgtattgagggtgatgagcgtactgaacttaaagagtcgctaagccgcttagaacta
cctaaaggtatgggcttaattgtacgtaccgcaggtgttggtaagtcgtttgaagaacta
aactacgatttaaaagcattattagtccactgggaagccattcaacaagcggcagacagt
gctaaagcaccatttttaattcaccaagaaagcaacgtaattttccgtgcaattcgcgac
tatttacgtcgtgacattggcgaaattttaattgataaaccacgtgtttttgaagaagct
aaagcccacatagagcgttttcgtcctgatttcatgagtcgcgttaagctttatcaaggt
gatacaccgttatttacacattaccaaattgaaagccaaattgagtctgcgttccaacgt
gaagtgcgcttaccttcaggtggttctattgtaattgaccctactgaagcacttacctct
atcgatatcaactcgtctaaagcaacaaaaggcggcgatattgaagaaacagcgcttaac
accaacctagaagcggcagatgaaattgcacgtcaacttcgtttacgtgatttaggtggc
ttaattgttatcgactttattgatatgacacctccacgtcatcaacgtgaagtagaaaac
cgcttaaaagatgctgctcgcccagatcgtgcgcgcgtacaaattggtaaaatttctcgc
tttggtttacttgaaatgtcgcgccaacgcctacgcccttcactaggtgaagcaagccaa
ggtgtttgtccacgttgtagtggtcaaggtactattcgttctaacgaatcaatcgcattg
tctattcttcgtttaattgaagaagaagcgattaaagacaacaccgctcaagttaatgct
caagtgcctgttgctgttgccgcttatttattgaatgagcaacgtcgtagcgttcaccgt
attgaaaagcatcataaatgtgatgtagtgattattcctaatcaacacatggaaacacct
cactacgaagtaatgcgtttacgtaaagacgaaacacttgaaactgtaagctacgagcaa
gttgttgcgcctgagcctgaagcatttgaaatgtctaaatcgccagcggcacctgttcgt
gaagagccgaagcttaaaggcgtcgttatgccttcaacgcctgctccacaagcggcagca
aaagctgcgccggtagtagaagcaaaagctgaaattggtttatttgccgcattaggtaaa
tggattaagtcgttatttgggtctgatactgagcaaaaatcagaaaaactgactgaaaag
caatcgcaagatcgccctagtaataaccgtggtaatgataatcgtcgtcgtaataacaac
caacgtcgtcgtaataataaccctcgtaataaatcgcgtaacgaacgtactgcagacact
gaagctaaaaatgagtcggcgcctgtaaatgatacgcaagaaaagaatgagaatcgcaat
aagcgccgtcgtaattcaaatacgcgtaaacgtcctgagcataaaactgaagataaaacg
caagtaaaagcagaggcaactcaaaatgcggatactgcagtaaaatctgataagaatgct
gatccaaaagagcaaaagcctaaggtacgtcgtcaacgtcgtaatttacgtaaaaaagtt
cgcgtacaagacgaaagcacagagcaagttcaaacaactgagcaagctgttgagcaacca
gtggttaaagaagacaagccacaagtgaaagagcaagctcctgttgttgaaaagcaagcg
ccggtatctgatgaaaaagcacctgcacctgctaaagaacaagctgaggctgttgttgat
gcaaacgataacgtggcaacacaagatgaagagcaagagcaaacacgtacccgctcacgt
cgttcaccgcgtcatcttcgtgcatctggccaacgtcgtcgtcgtcctgaaggtgaaaac
gcgcaagagaagtctgatgaagcgcctgctttcattccagttgcggatcaagccgctgct
gaatacgaagcagagctaaaagcaaaagcacataaaacggccgttgatgcctctgatgca
gttgaacaaaacattgttgaagaagaattagcgaaagttgaagagcctgtaaaagctgaa
gaaccagtaaaagctgaagaaccagtgaaagctgaagaaccagtaaaagctgaagaacca
gtaaaaactgaagaaccagtgcaaactgaagagccagtgaaagctgaagaaccagtgaaa
gctgaagaaccagtgcaagctgaagaaccagtgaaaactgaagaaccagtaaaagctgaa
gaaccagtgaaaactgaagaaccagtaaaagctgaagcaccagtgaaaactgaagaacca
gtaaaagctgaagaaccagtaaaagctgaagaaccagtaaaagctgaagaaccagtaaaa
gctgaagaaccagtaccagctgaagaagttgctgttgaagctgaaacagcaccggttagc
gctactgaaacacctgtagaatcgaaagaagcacctgtggttgaaaataaacctaaggca
gtttcgcaagcgagttcagctaatgtaaacgctaaaacagtgattacagcaggacatgca
agtgcgccaatggcacagcctacgcctgtagccgatagcgaaaccaagcatacatcggtt
gcaatggcacatgacaaacgtgagttaatccctgacagcggccttcgccctggctcggta
aaacctgccggtcgtgcaagctcagcaatgactaaaacgctgagtgctgaataa
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