Pseudoalteromonas issachenkonii: PI2015_3181
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Entry
PI2015_3181 CDS
T04164
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pia
Pseudoalteromonas issachenkonii
Pathway
pia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI2015_3181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pia03019
]
PI2015_3181
03400 DNA repair and recombination proteins [BR:
pia03400
]
PI2015_3181
Enzymes [BR:
pia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PI2015_3181
Messenger RNA biogenesis [BR:
pia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PI2015_3181
DNA repair and recombination proteins [BR:
pia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PI2015_3181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
TniB
SHCBP_N
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALQ56429
LinkDB
All DBs
Position
II:174925..176865
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AA seq
646 aa
AA seq
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MSTSLVQSLEQHFGFNQFRAGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPHLT
LVVSPLLALMKDQISFLNSKGIYAASLDSNQDQMQSSTVMNDVRSGKVKVLMVSVERFKN
ERFREFISQVALSMLVVDEAHCISEWGHNFRPDYLKLPRYREELNIPLVLLLTATATKKV
KRDMAERFAIEPQCIVQTGFYRANLDLNVLSVKTADKNNELTKIVRAQTGPGIVYVTLQQ
SAEQVANMLSAQGLQAVAYHAGLEDTLRGKIQDDFMAGKINVVVATIAFGMGVDKSDIRF
VIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFIYGDTPELSGIEYVIN
DIRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQYAYYADFKYKFLVDKNE
LLSQFDEQRQAFLTQIFSHTDFKKIWGTLNFDSLTQAAQVDRKRVVAALDYLAEKNLITL
ETKRITHVYKVHSEVINNPALAQQLHDYFTDKEQAEIKRIAALVRFFELQFCLSYNLARY
FDDANAPQQCGHCSVCRGHSVKLEYSIPPATIDTALIYQKVDEFLAHMATKGVHNVGIET
QCRFLAGMSVPLFARNKVRQLSGFALCEQQRYSEIKGTLLSRSMAK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctcgctagttcagtctcttgagcaacattttggttttaatcagtttagagca
gggcaacaacaaaccatagagcagctgctaaatggccaatcatcactggcaatatttcct
acaggatcgggtaagtcgttgtgctatcaactcactgcgttacatttaccgcatttaacg
ctggtggtatcgccgttattggccttgatgaaagatcaaattagctttttaaatagcaaa
ggaatctatgccgccagcctcgactcaaaccaagaccaaatgcaaagtagcactgtaatg
aacgacgtacgaagtggtaaagttaaagtgttaatggtgtcggttgagcgctttaaaaac
gaacgctttagggagtttataagccaagtggcgctttctatgttggttgttgacgaagcg
cattgtatatctgaatgggggcataactttagacccgattacttaaaattacctcgttac
cgtgaagagctaaatattccgttagtgctactattaaccgctaccgccactaaaaaagta
aaacgcgatatggccgagcgctttgctattgagccacaatgtattgtgcaaacggggttt
tatcgcgctaatttagatttaaatgtgctgagtgttaaaacggcggataaaaacaatgag
cttactaaaattgtccgtgcgcaaaccggccccggtattgtgtatgtcacgctgcagcaa
agtgctgagcaagtggccaatatgttaagcgcgcagggcctgcaagcagtggcgtatcat
gcagggcttgaagataccctacgcgggaaaattcaagacgattttatggcaggcaaaata
aatgtagtggttgctaccattgcctttggtatgggggttgataaatcagacatacgcttt
gtaattcactacgatttacctaaatcaatagaaaactacagccaagaaattggacgcgca
gggcgtgacggcaacccatcaaattgttataccctggctaatttagatggcttaaataca
gtagaaaactttatttacggcgatactccagagctcagcggtattgaatatgttattaac
gatattcgccaagctcaacagcaatgggaaatgcaagaatatagcctttcaagcgagagt
aatattcgccagcttgcccttaaaaccttgctggtacagcttgaaatgcaaggcgcaata
accccgcagtatgcttattatgccgattttaagtataaatttttggttgataaaaatgag
ttacttagccagtttgatgagcagcgccaagcttttttaacacaaatatttagtcatacc
gactttaaaaaaatatggggcacacttaattttgactccctaacgcaagccgcgcaggtt
gaccgtaaacgtgtggtagccgcgcttgactatttggctgaaaaaaaccttatcacgctt
gaaaccaaacgtattactcacgtgtacaaagtgcatagcgaggtgattaataatcctgca
cttgcccagcagttacacgattattttaccgataaagagcaagcggaaataaaacggatt
gctgctttagtacgcttttttgagctgcaattttgcttaagctataacttagcccgttac
tttgatgatgcgaatgcgccacagcagtgtggacattgctcggtgtgtcgtgggcattca
gttaagcttgaatattcaattccccctgcaacgattgatacagcgcttatttatcaaaag
gtcgatgagtttttagcgcacatggcaactaaaggtgtacacaatgtgggtattgaaacc
caatgccggtttttagcgggaatgagcgtgccactgtttgcgcgtaataaagtacgtcaa
ctaagtggttttgcactgtgcgagcaacagcgctacagcgaaattaaagggacattgcta
tcaaggtcgatggctaaataa
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