Paenibacillus ihbetae: BBD41_03000
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Entry
BBD41_03000 CDS
T05154
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pib
Paenibacillus ihbetae
Pathway
pib03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BBD41_03000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pib03400
]
BBD41_03000
Enzymes [BR:
pib01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BBD41_03000
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BBD41_03000
DNA repair and recombination proteins [BR:
pib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BBD41_03000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Ribosomal_S13
PknG_rubred
zf-H2C2_2
Motif
Other DBs
NCBI-ProteinID:
ANY71630
UniProt:
A0A1B2DV79
LinkDB
All DBs
Position
complement(685373..686191)
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AA seq
272 aa
AA seq
DB search
MPELPEMENYRRLLTQTIVNLPITNVVVNREKSLNVTIEQFTEALTGSRVIFVERRGKHL
VFHLNNGGRLLLHLMLGGMLYFGRKDEERPSRSTQVEITFGDHILYFIGLRLGYLHLLTA
RETDEALKHLGPELMDRRMNKARFVELIGKRRGALKSTMVNQQVVAGIGNCYADEIAFDA
RIHPLSKIQNLSAEALEQLYDSTVKVMTEAADGGGYMEMPFQAGDELTGAYNDRCKVYDR
EGEPCVRCGTPVIKTEHTGRKVFFCPNCQHET
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgccggaaatggaaaattaccgaagattattgacccagacgatcgtgaat
cttccgatcacgaatgtcgtcgtgaaccgggagaagtcgctgaatgtaacgatagagcaa
tttacggaggcccttacgggaagcagggttatttttgtggaacgtaggggcaagcatctc
gtgtttcacctgaacaacggtggccgactgctgctgcatctcatgctgggcggcatgctg
tatttcggacggaaggatgaggaacgcccatcgcgttccacacaggttgagattactttc
ggagaccatattttatatttcatcggccttcgtttaggctatttgcatttattgacggca
agagaaaccgatgaggcgttgaaacatcttgggccggagctgatggatcgccggatgaac
aaagctcgcttcgtcgagctcattggcaaacgccggggagcgctgaagagcacgatggtt
aaccagcaggtggtggccggaatcggcaattgctatgcagacgagatcgccttcgatgcc
cggattcatccgctctcgaaaattcagaacctgtctgcggaggcgctggaacagctgtat
gacagtacagttaaggtgatgacggaagcggccgacggagggggctacatggaaatgccg
tttcaagccggtgacgagttgaccggagcttacaatgaccgttgcaaggtgtatgaccgt
gaaggagagccctgcgtccgatgcgggactccggttataaaaacggagcataccgggcgg
aaggtattcttctgtccaaattgccagcatgaaacctaa
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