Paenibacillus ihbetae: BBD41_16080
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Entry
BBD41_16080 CDS
T05154
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pib
Paenibacillus ihbetae
Pathway
pib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD41_16080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pib03019
]
BBD41_16080
03009 Ribosome biogenesis [BR:
pib03009
]
BBD41_16080
Enzymes [BR:
pib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBD41_16080
Messenger RNA biogenesis [BR:
pib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBD41_16080
Ribosome biogenesis [BR:
pib03009
]
Prokaryotic type
rRNA helicases
BBD41_16080
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANY73975
UniProt:
A0A1B2E1X8
LinkDB
All DBs
Position
3660850..3662427
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AA seq
525 aa
AA seq
DB search
MPNFQQLGIDEQRVRKLKEQGIAVPTPVQQETIPLLLEGKDVIARARTGTGKTLAFMLPI
LQHIDPNRPFPQALIIAPTRELALQITEEARKLTAGEPDGIKILAVYGGQDVEKQLRKLE
GGRHLIIGTPGRLLDHLRRGTLELGGVKMLVLDEADQMLHMGFLAEVEALIDALPYRRQT
MLFSATMPAGVKQLAARYMNKPEDIVIKGASPIPLEQIKQVVVECTDRSKQDALRAMIER
YRPFLAIIFCRTKRRASALNEALLSAGYESDELHGDLSQAKREAVMKRFREAKLQLLVAT
DVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAVTFMAAKDRSDLARIEE
GISLRLKRVRYDAYEGNIQEDRGDNPGMESGRPRKARHVSSLESDRERGQGGGRREGGTG
SARRGQSDRSARGGSADGRSRSQAKGRAEQPRREESAGRGGGRGRLVAADDRGRGQSKGQ
GGAGRGSARSGGRSGSPARGQANQGGSRGSGSRGGSGRNGGRRGR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
ttgccgaactttcaacagctgggcattgacgagcagagagtgagaaaactgaaggagcag
ggaatcgcggtaccgacgccggtacagcaggagacgattccgctgctgctggaagggaag
gatgtcattgcccgggcgcggaccggaaccggcaaaacgctggccttcatgctcccgatt
ttgcagcatatcgatccgaatcggccttttccgcaagcgctcattatcgccccaacccgg
gagctggccctccagatcacggaggaagcccggaagctgaccgcaggggaaccggacggg
attaaaatattggccgtgtacggcggccaggatgtcgagaagcagctgcgcaagctggaa
ggcggccgtcatttgattatcggcacgccgggaaggctgctggatcatctgcgccgcggc
acgctggagctcggcggagtcaaaatgctcgtgctcgatgaagcggatcaaatgctgcat
atgggctttttggccgaagtggaggcgctgatcgatgcccttccataccgccgccagacg
atgctcttctcggccacgatgcctgccggggtaaagcagcttgcggctcgttatatgaat
aaacctgaagatattgtgattaaaggggcatctcctattccgctggagcagatcaagcag
gtggttgtcgagtgtaccgaccgctccaagcaggacgccctccgggccatgatcgagcgg
taccggccgtttcttgccatcatcttctgccgtaccaagcggcgggcatcggctcttaac
gaagccctgctctctgccggatacgaatcggacgagctccacggcgacctgtcccaggcc
aagcgcgaagcggtcatgaaacggtttcgggaagccaagcttcagctcttggtcgccacg
gacgtggccgcccgggggctcgatgtggagggggttacgcatgtatttaactacgatatg
ccccatgatgttgaaagttacatccaccggatcggccggaccggacgcgcgggaggcagc
ggaatggcagtgacctttatggcggccaaggaccgttcggacctggcgcggatcgaggag
ggcatttcgcttcgcttgaagcgggtgcgctatgacgcatacgaggggaatatccaggag
gatcgcggagacaacccgggtatggagtccggccgtccgagaaaagctagacatgtctct
tcgctcgagtctgaccgcgagcgcggccaaggcggcggacgaagagagggcggaacggga
tcggcacgccgcggtcaatcggaccgcagcgcaagaggcggcagcgccgatggccggagc
cgttcccaagccaaggggagggcggagcagccccgcagggaagaaagcgccggacgcggt
ggcggccgaggaagattggtagctgccgatgaccgcggccgcgggcagagcaaaggccaa
ggcggtgccggccggggatcggcaagatccggcggccgcagcggcagtccggcccggggc
caggccaaccagggcggcagccgcggttccggcagtcggggaggaagcggccggaacgga
ggacgccgcggccgttaa
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