Paenibacillus ihbetae: BBD41_17315
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Entry
BBD41_17315 CDS
T05154
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pib
Paenibacillus ihbetae
Pathway
pib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBD41_17315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pib03021
]
BBD41_17315
03400 DNA repair and recombination proteins [BR:
pib03400
]
BBD41_17315
Enzymes [BR:
pib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBD41_17315
Transcription machinery [BR:
pib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBD41_17315
DNA repair and recombination proteins [BR:
pib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBD41_17315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ANY74201
UniProt:
A0A1B2E2N2
LinkDB
All DBs
Position
3973059..3976673
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDIEKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNNPEWMVMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEKGTGMILGSVNEAVSAYQRGTAGLHARVAIP
VKALGKTSFTEEQQKAMLITTVGRIIFNEIFPASFPYINEATRTNLLQGTPEKYFVYEKG
ANLQEAIQSLPVSGAVGKEYLGQIIARCFETYHTTETSVILDKIKQLGFTYSTRAGVTVA
VADVIVPEEKNEILRESDEKVRVVTNQYRRGLITNEERYDRVIDIWSKAKDDITDVLMKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFLS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDECSTDKGFTVSRIQDGKEVIEDL
YDRIEGRYSFETVRHPETKEIIVNRNELIDSDKAAEIVKAGVESVQIRSILSCRARYGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIRETKDRREIEIQGEAETKVYSVTYGSRLRVSEGKHIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGDTNLLPGSYVDIHEYEVANKEAILSGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMSRYRNVRFEGQNDANDESQELET
ASVE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaattttgagtacatgaagatcggtcttgcttccccagagaaaatc
cgctcgtggtctcgcggagaggttaagaagccggagacgattaactaccgtacattgaag
cccgagaaggaaggtctgttctgtgaacggattttcggtccgcagaaggactgggaatgt
cattgcggcaagtataagcgtgtccgttataaaggcgtagtctgtgaccgctgcggcgtt
gaagtaacgcgtgccaaagtccgtcgtgaacggatggggcatattgagctggctgcaccg
gtttcgcatatttggtatttcaagggcattccgagccggatgggtctggcgctggatatg
tccccaagatccctggaagagatcatttatttcgcatcttatgtcgttacggatccaggc
gacacaccgctggagaagaagcagctgctgtccgagaaggaatatcgcagctatcgcgag
aagtacggctacggcttccaagccggcatgggtgctgaagcggttaagaagctcctgcag
gatctggatattgaaaaagagctcgagttcctgaaagaagagctgcgcacggctcaaggg
cagcgtcgtaaccgtgcgatcaagcgtctggaggttatcgaggcattccgcaactccggc
aacaatccggaatggatggttatggacgtgctcccggttattccgccggaactgcgcccg
atggtgcagcttgacgggggccgttttgcgacctcggacttgaacgacctgtaccgccgc
gtcattaaccggaacaaccgtctgaagagactgctggacctcggagcgccggacatcatc
gtgcagaacgagaagcgcatgctgcaggaagctgtcgacgcgctcatcgataacggccgc
cgcggccgtccggtaacaggtccgggtaaccgtccgctcaaatccctcagccacatgctg
aaaggtaagcagggacgtttccgtcagaacttgctcggtaaacgggtagactattccggt
cgttccgttatcgttgtaggaccttatctgaaaatgtaccagtgcggtcttcctaagaag
atggcgcttgagctgttcaaaccgttcgttatgaaagaactggtcaataaaggccttgca
cataatattaagagtgcgaagcgcaaagtagaacgcgtcagcccggaagtatgggatgtg
cttgaggaagtcattaaagagcatccggttcttctgaaccgtgcaccgacgcttcacaga
ctcgggatccaggcgtttgaaccgattctcgttgaaggtcatgccatccgtcttcacccg
ctcgtatgtacggcttacaacgccgacttcgacggtgaccaaatggcggtacacgttccg
ctgtcggctgaagcccaagcggaagcgcgtctcctgatgctcgcatccggcaacatcttg
aacccgaaagacggtaagccggtcgtaacaccgtcccaggatatggtcctcggttccttc
tatctgaccatggataacaaggaagagaagggcaccggcatgatcctgggcagcgtgaac
gaagcggtatccgcgtatcagcgcggaactgcgggcctccatgcccgtgtagcgattccg
gttaaggctctgggtaaaaccagctttacggaagagcagcaaaaggcgatgctgattacg
acggtgggacggattatcttcaacgaaatcttccctgccagcttcccgtacatcaacgag
gctacccgtaccaacctgcttcaaggtacgcctgagaagtatttcgtatacgaaaagggt
gccaacctgcaagaagctattcaaagtcttccggttagcggcgcggtcggcaaggaatac
ctgggtcaaatcatcgcccgctgcttcgagacgtaccatacgacagaaacctctgtcatt
ctggataagatcaagcagctcggcttcacgtactcgactcgtgcaggcgtaacggttgct
gtagccgacgttatcgtccctgaggagaagaacgagatcctgagagagtccgacgagaag
gttagagtggtaaccaaccaataccgtcgcggcttgattacgaacgaagaacgctatgac
cgcgtcatcgacatctggtcgaaagcgaaagacgatattacggacgtcttgatgaaatcg
atggaccgcttcaattccatcatgctcatggtggactccaaagcgcggggtaacaaatcg
cagatcacccagctgggcggtatgcgcggtctgatggcgaacccgtcgggccgtatcatc
gagctcccgatcaaatcgaacttccgtgaaggtctgacggtactcgagtacttcctgtcc
acgcacggtgcgcgtaaaggtctcgccgatacggcgcttcgtacggctgactcgggttat
ctgacccgtcgtctcgtcgacgtggcgcaggacgtcatcgttcgcgaggatgagtgcagc
acggataaaggcttcacggtaagccggatccaagacggtaaggaagttatcgaggatctg
tacgatcggatcgaaggacgctactcctttgaaacggttcgtcatccggagacgaaagag
atcattgttaaccgcaacgagctgatcgattcggataaagcggccgaaatcgtcaaagcc
ggcgtggagtcggtacaaatccgctccatcctgagctgccgcgcgcgttatggcgtctgc
aagaagtgctatggccgcaatctggctaccggcaagcatgttgagattggtgaagcggta
ggtattatcgcggctcaatccatcggtgaaccgggaacccagcttaccatgcgtacattc
cacacaggcggcgttgccggtgacgatattacgcaaggtcttccgcgtatccaggagctc
ttcgaggcccgtaatcctaaaggtcaagcgaccattagtgagatcgacggtgtcgtgaaa
gagatccgcgaaacgaaagaccgtcgtgaaattgaaattcaaggcgaggccgaaacgaag
gtctactccgttacgtatggctcccgtctgcgcgtaagcgaaggcaagcacatcgaagcc
ggggatgaactgaccgacggttcgatcgatccgaaagaaatgcttcgcattaaagggatc
cgcggcgtgcagaactatatccttcaggaagttcagcgcgtataccggaaccagggcgta
gaaatcaacgacaagcacgttgaggttatgatccggcagatgctgcgcaaaatccgcatc
gtcgacgccggtgatacgaatcttctgcctggatcctacgtggatatccatgaatacgaa
gtggccaacaaagaagccattctgtccggcaaagagccggcggttgcgaagccggttctg
ctcggtatcacgaaggcttcccttgagacagactccttcttgtccgcggcctccttccag
gagacgacccgcgtcctgacagatgcagcgatcaaaggaaaagtcgaccagctgctcggt
ctgaaagagaatgtcatcatcggtaagctgatccctgcgggaacaggcatgagccgttac
cgcaacgtgagattcgagggccagaacgatgcaaacgatgagagccaggagctggaaacc
gcttctgtagaataa
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integrated database retrieval system
