Paenibacillus ihbetae: BBD41_19405
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Entry
BBD41_19405 CDS
T05154
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pib
Paenibacillus ihbetae
Pathway
pib03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBD41_19405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pib03400
]
BBD41_19405
Enzymes [BR:
pib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBD41_19405
DNA repair and recombination proteins [BR:
pib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBD41_19405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ANY74562
UniProt:
A0A1B2E3S9
LinkDB
All DBs
Position
complement(4383064..4383981)
Genome browser
AA seq
305 aa
AA seq
DB search
MARTVKGTLTIEGQEIQITNPDKPLWPEVGITKAIYLQKLAAISPYLLRYCKGRLLTTIR
YPHGVDGESFYQKNAPEPLPPFVSTYVHEGINYVMLNGLPELLWLGNLAALEFHPSLHLA
GDVLPCEWMIDLDPSLPEEPRIMEATAIVGNVLHSLGIASVPKTSGATGVQIIVPIPEGI
TFDELRSVGQFVGQYVTEKHPELFTIERLKKNRGDKIYFDYLQHYSGRTLAAPYTPRARR
LATVSTPLTWEEVQRDVSPSDFHLLNIEQRLKEKGDLLQALPPQPIGDIIRHLNAKGKPA
SKRKG
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtaccgtcaaaggaacgctgaccattgaaggtcaagagattcagattaccaat
ccggacaagccgctgtggcccgaggtcggcattaccaaagccatctatctgcagaagctc
gcggcgatctctccctacctgctccgctattgcaaaggcaggctgctgacaaccatccgt
tatccgcacggcgtggacggggaatcgttttatcaaaaaaatgcgcccgagccgctcccg
ccctttgttagcacctatgtgcacgagggcatcaactatgtcatgctgaacgggctgccc
gagctgttatggctgggcaacctcgcagccttggaattccacccttcgctccacctggcc
ggtgacgttctgccatgcgagtggatgatcgacctggacccgtcgctccccgaggagcca
aggatcatggaagccaccgctatcgtcggcaatgtgctgcactcgcttggaatcgcctcc
gttccgaaaacgtcgggggcaaccggggtgcagatcatcgtcccgattcccgaaggcatt
acgttcgatgagctgcgctccgtcggccaattcgtaggtcaatacgtaacggagaaacac
cccgaattgttcaccatcgagcggctaaagaaaaatcgcggcgacaaaatctatttcgat
tatctccagcattacagcggaagaacgcttgccgcaccatatacccccagggcaagacgc
ttggcgacggtatcgacgccgctcacctgggaagaggttcagcgggatgtctccccgtcg
gatttccacctgctgaacatcgagcagcgtcttaaagagaagggcgacctgcttcaggcc
ctgcctccgcagccgatcggagacatcatccggcatctgaatgccaaggggaagccggca
tcaaaacggaaaggatag
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