Paenibacillus ihbetae: BBD41_22390
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Entry
BBD41_22390 CDS
T05154
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pib
Paenibacillus ihbetae
Pathway
pib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD41_22390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pib03019
]
BBD41_22390
03009 Ribosome biogenesis [BR:
pib03009
]
BBD41_22390
Enzymes [BR:
pib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBD41_22390
Messenger RNA biogenesis [BR:
pib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBD41_22390
Ribosome biogenesis [BR:
pib03009
]
Prokaryotic type
rRNA helicases
BBD41_22390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
AAA_19
CMS1
AAA_22
AAA_30
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
ANY75096
UniProt:
A0A1B2E553
LinkDB
All DBs
Position
5060551..5062161
Genome browser
AA seq
536 aa
AA seq
DB search
MKNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPL
IHKIAKEEERIVALVMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMDDIQSILKLVPENRQTLL
FSATMPPNIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERVTR
HRIPRKPLPTMAEAIEGKQRVIAERVLEIIDQGELTEYKGLAIQLLEQYDSVQLLAAAMK
LLTGDKKEAADIHLTPEDPIRAKRRKPDIRSGRKPSGGYNGRSYGGGYRGNREGGGNREG
GGNRGGYSKGGYSRDGGGSYNNRDGGGGYNRDRNNSGDRKPRSYSGGERRPNRGDE
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaattttgcagattttggcttggagcctcgagtgcttcaagcaattacggaactt
ggatttgaagaagcgacaccgattcaatcccaatccatcccgattgccctcaccggaaag
gacatgatcggacaagcacagacaggtaccggtaagaccgcagcattcggccttcctctt
attcacaaaatcgcgaaagaagaagagcggatcgtcgctctcgtcatgacgccaacccgc
gaactcgccattcaggttgccgaagagatcggcaaattgtccagatttaaagggatccgc
tcccttgcgatttacggcggacaagatatcggccgacaaattcgcgctttgaagaagaag
ccccaaattattatcggcacacctggccgattgcttgaccacattaaccggaagaccatc
cggcttgacgatgttcaaaccgtcgtgctggacgaagcggatgaaatgctggacatgggc
ttcatggacgatatccaatccatcctgaagctggtaccggaaaatcgtcaaaccctgctg
ttctccgcaacgatgcctccgaacatccagaagctggcttcccagttcctgaaggatccg
gagcatgtatccgtcattcctaagcatgtgagcgcaccgctgatcgaccaagcctacatc
gaggttcctgagcgtcagaagttcgaagcgctgagccgtctcctcgatatggaatcgcct
gagctggcgattgtattcggccgcacgaagcgccgcgtagacgaattggccgaagcgctg
caaaagcgcggctattccgcagacggcctccatggcgacctgtcccagcaccagcgcgat
accgttatgcgcaaattccgcgacggcagcatcgatgtgctggtagcaaccgacgtagcg
gctcggggtctggacgtatccggcgtaacgcatgtcgtcaacttcgacttgccgcaggat
ccggagagctatgtacaccgtatcggccgtaccggccgcgcagggaaggaaggtacggca
tggtccttcgtaaccccgcgtgaaatggatcatctgtacttcatcgagcgcgtgacccgt
caccggattccgcgcaagccgctgccaacgatggctgaagccattgaaggcaagcagcgc
gtcatcgctgaacgcgtattggaaatcatcgaccaaggcgagctgaccgaatacaaaggc
cttgccatccagcttctggagcagtatgactccgttcagctgcttgcagctgcaatgaag
ctcctgacaggagacaagaaggaagcggccgatatccaccttacgccggaggatccgatt
cgtgcgaagcgccggaagccggacatccgcagcggacgcaagcctagcggcggttataac
ggccgcagctacggcggcggataccgcggcaaccgcgaaggcggcggcaaccgcgaaggc
ggcggcaaccgtggaggctactccaagggcggctacagccgtgacggaggcggcagctac
aataaccgtgacggaggcggcggctacaaccgtgaccgcaacaacagcggcgaccgcaag
cctcgcagctacagcggcggcgaacgtcgtccgaaccgcggggacgagtaa
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