Scheffersomyces stipitis: PICST_23784
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Entry
PICST_23784 CDS
T01023
Name
(RefSeq) predicted protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_23784
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_23784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_23784
03041 Spliceosome [BR:
pic03041
]
PICST_23784
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PICST_23784
mRNA degradation factors
5'-3' decay
Lsm complex
PICST_23784
Spliceosome [BR:
pic03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PICST_23784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
KOW7_SPT5
LSM12_LSM
IFT20
BPL_C
Hfq
Motif
Other DBs
NCBI-GeneID:
4839889
NCBI-ProteinID:
XP_001385701
JGI:
23784
UniProt:
A3LWP7
LinkDB
All DBs
Position
6:complement(<64304..>64522)
Genome browser
AA seq
73 aa
AA seq
DB search
TVLPLEIIDKSIGHEIRVLMTNDKEFTGKLVGFDDFVNMVLEDVREIDSDVKSDKVIKKM
LLNGGQVAMIIPA
NT seq
219 nt
NT seq
+upstream
nt +downstream
nt
actgtgttgccattggaaatcatcgacaagtctattggacacgagatccgtgttttaatg
accaacgataaggagttcactggtaagttggttggattcgatgactttgtcaacatggtt
ttggaagacgtcagagagattgacagcgacgtcaagagcgataaggttatcaagaaaatg
ttgttgaatggcggacaagtggctatgataattccagca
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