KEGG   Scheffersomyces stipitis: PICST_23784
Entry
PICST_23784       CDS       T01023                                 
Name
(RefSeq) predicted protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
pic  Scheffersomyces stipitis
Pathway
pic03018  RNA degradation
pic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PICST_23784
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PICST_23784
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pic03019]
    PICST_23784
   03041 Spliceosome [BR:pic03041]
    PICST_23784
Messenger RNA biogenesis [BR:pic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PICST_23784
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PICST_23784
Spliceosome [BR:pic03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PICST_23784
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C KOW7_SPT5 LSM12_LSM IFT20 BPL_C Hfq
Other DBs
NCBI-GeneID: 4839889
NCBI-ProteinID: XP_001385701
JGI: 23784
UniProt: A3LWP7
LinkDB
Position
6:complement(<64304..>64522)
AA seq 73 aa
TVLPLEIIDKSIGHEIRVLMTNDKEFTGKLVGFDDFVNMVLEDVREIDSDVKSDKVIKKM
LLNGGQVAMIIPA
NT seq 219 nt   +upstreamnt  +downstreamnt
actgtgttgccattggaaatcatcgacaagtctattggacacgagatccgtgttttaatg
accaacgataaggagttcactggtaagttggttggattcgatgactttgtcaacatggtt
ttggaagacgtcagagagattgacagcgacgtcaagagcgataaggttatcaagaaaatg
ttgttgaatggcggacaagtggctatgataattccagca

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