Scheffersomyces stipitis: PICST_28599
Help
Entry
PICST_28599 CDS
T01023
Name
(RefSeq) predicted protein
KO
K15079
structure-specific endonuclease subunit SLX4
Organism
pic
Scheffersomyces stipitis
Pathway
pic03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
PICST_28599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_28599
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
PICST_28599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
Polysacc_lyase_14
Motif
Other DBs
NCBI-GeneID:
4851367
NCBI-ProteinID:
XP_001387544
JGI:
28599
UniProt:
A3GGG8
LinkDB
All DBs
Position
1:1620870..1623218
Genome browser
AA seq
782 aa
AA seq
DB search
MVDSESQNDFANDGDNDSYFVSTQFESKQEEIMEKELQKLQTGQTVSQLLRFRSGISGLT
SVTPKPVKVSRPGLRKTGSRKSKKNQSMSAMVKERFKTDKYAYFSGDQRKIDEFLRRLEG
SEDIENMAMSTSGKDGSCLFTRDEWICIVQSIKLRFPELSTTKKKSLSAITRQINKQEKE
NEDENSIWSQARSLPSLELTDEDLKWLYDLDDEQMANRTITSSMTEVDGNDDHSPFVMTL
SQTTPSQLSHIKESDSLYSQETNVQTTEPADHQSGHMQRCHSQTAEGKTQSKILEIEIVS
DSEEEIESLIRNTEPDSSEDVYGANEVSSHQVPAVDALASFQSFPFAADMIPRNNVRDKE
HESLHISSSIRSSPAQSLTQSQVPSSIDSIIEPPCESPRKMSPIRDTQPEPVITSPFKTP
TKKSKELLSKYSSPVKNSIHNNMGSPVAMMVPRSSESAKHVEEIIVSSDEESVYSTAKSV
FPSAQIVISEVEDEDEEFYEIVSSIPEKHKPTAAAKKRKLLQTSRYEVVSNFNINDYDDD
QRGFKLRKLETKPIIIDSDNEIADSEEDEKNLSIIEITREVEAEESEHDTEYLINLGKQV
EGNSKMNTSVLQVPSSPSSITFGRTDILKELEAFSNSDLDTDRTINSNTSKNSNAIKSGT
NQTIDFTLLSTKELQERFKKWELKPVQGRQRMVSVLSEVSKLFTNSFNDPVPETRQGFEG
TVYGSLNRLVGSNQYWHEKIISFEPLRVSELRDWICTKGYELEEDFLMRYCDDNGYCCTR
QP
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggtcgacagcgagctgcaaaatgatttcgcgaatgacggggacaatgatagttacttt
gtatctacacaattcgagctgaagcaggaggaaatcatggagaaggagcttcagaagcta
caaactggtcagactgtatcacaattgcttcgttttagaagtggcatttctggtctaacg
agcgtcactccaaaaccagtcaaagtttctagacctggacttcgcaaaactggtagtaga
aaactgaaaaagaaccagtccatgagtgccatggtgaaagaacggttcaaaactgataag
tacgcatatttttccggagatcagcgtaagatagatgaatttctacgacgcctagaaggc
tcggaagacattgaaaatatggctatgtccactctgggaaaggacggatcgtgtttattc
accagagacgaatggatttgtattgtacaatcaataaagttacgctttcccgagttatcg
acgacgaaaaagaaatctctaagtgctataaccagacagataaataaacaagaaaaggaa
aatgaagatgagaatagtatatggtctcaggcgagatcgcttcctagtttggaattgaca
gacgaagacctcaagtggctctatgatctagatgacgagcagatggctaatagaacgatc
actagtagtatgactgaagttgacggcaatgatgaccatagcccatttgtcatgactctt
tctcagacaacgccttcacagctatcacatataaaagaaagcgattccttatactcacag
gaaacgaatgtacaaacaacagaacctgcggatcatcagtctggacatatgcaacgttgc
catagccaaactgcggaaggcaagacacagagcaaaatactagaaatcgaaatagtctct
gattcagaagaagaaatagaatctttgattcgtaacacagaaccagactcactggaagat
gtatatggagcaaatgaggtatcgtcacatcaagtcccagctgtggacgcgttggcgtca
ttccagagctttccatttgctgcagatatgattccgcgtaataatgtcagagataaggaa
cacgaatcacttcatatatcatccagtatacgctcctctcccgcccagtcgcttactcaa
agtcaggtgccttctctgattgactctataattgaacccccatgtgaaagccccaggaaa
atgtctcctatcagggatactcagccagaacctgtcattacatcgccattcaaaactcct
actaagaaatcaaaagagcttcttagcaaatacagttcacctgtcaaaaatagcatacac
aacaatatgggtagccctgtggcaatgatggtgcccaggtcttcagaactggccaagcat
gtcgaggaaatcattgtttcctccgatgaagaatctgtgtattcgactgctaaatcagtt
ttcccttcagcacaaatagtgattctggaagttgaagatgaagatgaggaattctacgag
attgtatcgtctattcccgaaaagcacaagcccacggcagcagcaaaaaagagaaaatta
ttgcagacttcgaggtacgaagtcgtgagcaatttcaacattaatgattacgatgacgac
cagcgtggtttcaagttgcggaaacttgaaacaaagcctataataatagattctgacaac
gagattgcagattctgaagaagacgaaaagaacctcagtataatagagataacccgggag
gtagaagctgaggagtcggaacacgatacagaatacctaattaacctcggaaaacaggta
gaaggaaatagtaagatgaatacttctgttttacaagttccttctagtccctcgtcgata
acgttcggaaggacagatatccttaaagagcttgaagcgttcagcaattctgacttggac
actgacagaactatcaacagcaatacttccaagaatagtaatgctatcaagagtggtaca
aatcaaacgatcgatttcaccttgttgtctaccaaggaattacaagaaaggttcaagaag
tgggaactaaagccagtacaaggacgtcaaagaatggtactggttctttctgaagtttct
aagttgtttactaactcgttcaatgatccagttccagaaaccaggcaaggatttgaaggc
acagtatatggatcgttgaaccgtctcgttggactgaatcagtattggcacgagaagatc
ataagcttcgaaccgttacgagttagcgaactacgagattggatctgcaccaaaggctac
gagttggaggaagattttctcatgaggtactgcgacgacaatggatattgctgtacacgc
caaccgtaa
DBGET
integrated database retrieval system