Scheffersomyces stipitis: PICST_30460
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Entry
PICST_30460 CDS
T01023
Symbol
SMC5
Name
(RefSeq) structural maintenance of chromosomes protein
KO
K22803
structural maintenance of chromosomes protein 5
Organism
pic
Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_30460 (SMC5)
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
PICST_30460 (SMC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_29
AAA_21
ABC_tran
CCDC89
AAA_27
VPS51_Exo84_N
AAA_33
GSKIP_dom
HSBP1
RNA_helicase
AAA
Motif
Other DBs
NCBI-GeneID:
4837901
NCBI-ProteinID:
XP_001383656
JGI:
30460
UniProt:
A3LQV2
LinkDB
All DBs
Position
3:complement(<118225..>121506)
Genome browser
AA seq
1093 aa
AA seq
DB search
MTDIYQAIGDLRQYVGPNDSESVAKRRKVQSSRDFRPGSLMKLKLTNFNNYGSGEFNLSP
SLNMVIGPNGSGKSTVVSAICLGLGGKIDLIKRQTLSSMIKKGKSTASTEVTIKNFDGQP
PILVKREFTAKENRWYINHRPATEAKVKELRARFNIQLDNLCHFLPQERVAEFAGMSQEK
LLMETERTLGDGQLYRLHEDLIKNDTSRQDVTTRIEELEEKLSKFNEERSRLEADIKKLE
EYEGKTLEIEQHTKIIPYAQLSDLKKQRADLKRERDKAKSKLSKFLSSMDPLKDQHKEIE
TKVEMEKGLYSDIDDKQKEIRSRFINRKADLSKIKEEIGGLKSTVESLKSKSIKLQNQLK
KLEEKRHELISQRDLIVLPDKDEVEGYRKLRREVSEKKDEIGSKIEDLEDKIQEKQSSRK
EIMNNKKRVEQSLNSKDRLMVLSPRGGPPNSLRDGAYNAHKFLRDEAQLKDHYFESPVVC
CTVTNKTMAPHLEKVIDNNTLFSITTTNKQDFSMISSFQRKMKINFPIRLTTNSGTRNPR
IPKERLKQWGFECYLSDFLSGPGPVVDMIYDISKIQDIPVSRSGLSEEQIERLTMLDGNG
RYPFKKFISHDTLFVLTKSNYGSNQVSYTTEKVTGSRWFDSSGLTQEAKDFMNGQLQEFK
DRYNVLKGEEDGYLVEKQSLDSESRKLSAELEKYKNKIQHFTNETKNRAKIEGKLTALDA
QIKKTTKESTEDTSEQVDETEEKIKSKYLDYSNKLSELSIIGKESSDVAIELSLQSFRVL
QIRNREIAARNLIAKVEEQQVSLRKEYERLKAEYDQIKKGDAVKKIEEQSASYTPEERVL
LSRLAKAYMDAGNFSEQVIRDKISLLEDERSVMATADVSSIERLRRTLTEIDSLEKTLPR
LKDDKSKLDKRISDIQEAWEPELTKAIRNISLAFNKRFSRVASDGQVELAKAERFKDWKL
QILVKFRQESELKVLDHQSQSGGERAVTTIFFMMSLSGLTNSPFRVVDEINQGMDRKNEK
MAHRYLVDTACHSLSSQYFLVTPKLLTGLYYHPEMAVHCIYSGPLVDGTDRGNKEPDFMD
FKANSLAQKSIYT
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgacggacatataccaagccataggcgatttgagacaatatgttggtcccaatgattct
gaatctgtggctaagcgtaggaaagtacagagttctcgtgatttccgtcctggaagtctt
atgaagttgaagttgaccaatttcaacaactacggtagtggagagttcaatttgtctcct
tcactcaacatggttattggtcctaatggatctggtaaaagtactgtagtttctgcgatc
tgtttggggttgggtggaaagattgatcttattaaaagacagactctttcttccatgatt
aagaaaggaaagtccacagcttcaactgaagttacaatcaagaattttgatggtcaacct
cctattttagttaaaagagagttcacggcaaaagaaaaccgttggtatataaaccacagg
ccggccacagaagccaaagttaaagagttaagagctaggtttaacatccagttggacaat
ttatgtcactttttgccgcaagagagggtagctgaatttgctgggatgtcacaagagaag
ctacttatggaaacagaaagaactttaggtgatggccagttgtaccgtcttcatgaggat
ttgatcaagaacgatactctgagacaagatgtgactacaagaatagaagaacttgaagaa
aagttactgaaattcaacgaagaaagaagtagactagaagcagatataaagaagcttgaa
gagtatgaaggaaagactctagagatagagcaacacacaaagataattccgtacgcccaa
ctatctgatctcaaaaaacagagagcagatttaaaacgagagagagacaaagcaaaatct
aaattgtcgaagtttttatcttccatggaccctttgaaagaccagcataaagaaatagaa
accaaagttgaaatggaaaaaggactatattccgatatagatgacaagcaaaaggaaata
cggtctaggtttatcaatagaaaggcagatttatcgaaaattaaggaggaaatcggaggc
ttgaagtcaacggttgagtctttgaagagtaaatcgatcaaattgcagaatcaattaaag
aaacttgaagaaaaaaggcacgaattgatttcacaacgtgacttgatagtattacctgac
aaagatgaggttgaaggttacagaaaattgcgaagggaagtgtctgaaaagaaggatgaa
ataggaagcaagattgaagacttggaggacaaaattcaagaaaagcaatcgtcacgaaaa
gaaatcatgaacaataagaagcgagtagagcagagtttaaacagtaaagatagactaatg
gtcctttctccaagaggggggccgccaaactctttgagggatggggcatataatgcacac
aagtttctcagagatgaagctcagttaaaggaccattattttgagtcgcctgtggtttgt
tgtactgtaacaaacaaaacaatggccccacacttggaaaaggtgattgacaacaatacg
ctcttttcaattaccaccactaacaaacaagatttcagcatgatctcttcttttcaaagg
aagatgaagataaatttcccaattagattaacaaccaacctgggtacacgaaatccacgt
attcccaaagaaagattaaagcaatgggggttcgaatgctacttgtcagattttctttcg
ggtccagggccagtggtagatatgatatatgatatatcaaagattcaggatattcccgtg
agtagaagtggattatcagaagagcagatcgaacgattgacaatgctagatggaaacggg
agataccctttcaagaagtttatttctcatgatactctatttgtgttgactaaatcgaac
tatggtctgaatcaagtttcttatactacggaaaaggttactggatctagatggttcgat
tcatcaggattgactcaagaagctaaagatttcatgaatggtcagttacaggaatttaag
gacaggtacaacgttttaaaaggcgaagaagatggatatcttgttgagaagcaaagtctc
gattcagaaagtcgtaaactttcggctgagcttgagaaatataaaaataaaattcagcat
ttcaccaatgaaacgaaaaacagggcaaaaatagaaggaaagttaacggctcttgacgcg
caaatcaaaaagacaacaaaggaatctacagaagacacaagtgaacaagttgacgaaacc
gaagagaagatcaaatcaaagtatttggattattcaaacaagttatcggagcttagtatc
attggtaaggaatctagcgatgttgctattgagctaagtttgcaatcatttagagtgctt
caaatcagaaacagagagatcgcggcccggaatctaattgctaaagtagaagaacaacaa
gtttcattaagaaaggagtatgaaagattgaaagcagaatatgaccaaattaagaagggg
gatgctgttaaaaagatcgaagaacagagtgcttcgtacactccggaagaaagagtacta
ttgtctaggcttgccaaggcatatatggatgctggtaacttctcagaacaggtgataaga
gacaaaatactgcttttagaagacgagcggtctgtgatggctactgctgatgtgagttcc
atcgaaagattacggaggaccttgactgaaattgattcactcgagaagactcttccaagg
ttgaaggacgacaagtctaaattggacaaaagaattagtgatattcaagaagcatgggaa
ccagagctaactaaggcaattcggaatatttcattagcatttaacaagcgattctccaga
gtcgcaagcgatggacaagtagaattagccaaagcagaaagattcaaagattggaaattg
caaattctagttaaatttagacaagagtcagagctaaaggttttggaccaccaatcacaa
tctggaggggaaagagcagtaacaactatctttttcatgatgtctttgctgggattaaca
aattctccatttagagttgtggatgaaatcaatcaagggatggatcgaaagaatgaaaag
atggctcacaggtacttggtggacacggcctgccatagtttgagttcacagtatttcttg
gtcactcccaagcttttgacaggtctctattatcatcctgaaatggcagttcattgcatt
tattctggtcctttggtcgacggaacagatagaggaaataaggaacctgatttcatggac
ttcaaagcaaattcattagcgcagaaatctatatatacatga
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