Scheffersomyces stipitis: PICST_30953
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Entry
PICST_30953 CDS
T01023
Name
(RefSeq) predicted protein
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PICST_30953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_30953
03009 Ribosome biogenesis [BR:
pic03009
]
PICST_30953
03036 Chromosome and associated proteins [BR:
pic03036
]
PICST_30953
Enzymes [BR:
pic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
PICST_30953
Messenger RNA biogenesis [BR:
pic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PICST_30953
Ribosome biogenesis [BR:
pic03009
]
Eukaryotic type
90S particles
RNase
PICST_30953
Prokaryotic type
rRNA processing factors
PICST_30953
Chromosome and associated proteins [BR:
pic03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
PICST_30953
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_3_N
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
4838343
NCBI-ProteinID:
XP_001383550
JGI:
30953
UniProt:
A3LS79
Structure
PDB
PDBj
LinkDB
All DBs
Position
3:<1349256..>1350956
Genome browser
AA seq
566 aa
AA seq
DB search
MSQFGSLEGFLNSLTQVDSERTDVVTDHGGKASDEVNHSPAEDASNSKSKREYGYTGSLL
PKRPKLDSPSVPPIGFVDLQKLEYATKTLQKNVRLIVTESPDIDSIEKLLNSSTLDSGAK
VDLKNNNYIKVASRLKSKYKIGKLPIFDEITAGDIKISDEEFDKIAQLNDCSDSEESPTY
LPVDSSSTQEKRVFTTGIDNKHPPLPFIKDQTLYERVFVHKSVVNGKTYLDQNDLINSHN
ERLEFLGDSVLNNLVTLIIYDKFPSASEGKLTKMRSQLIDNHTLTQFSFEYGFDKRLKTK
TDEEILKTGDQKVYADIFEAYIGALSVERGLDLREIKDWLEKLYAPKLEAFKVNFLQESV
NKEAKSELYSIVGTASSHPLYVVVEEGNGSHDFVVECRMGNDVLGRAKAPSQKEAGLRAA
MDALKNRQLLEKYYKIRLEIDRKDSVKSSKSKRSREEDEDSDYSMRTPTPSSPIKTIMFP
LVASADAPIDNNAKNKLYAEIGKRLGEVPQYIVSRANNDIAAVSLSIRGLVVATATDKSK
KKAMARAAMAILENSSALNEICKGTI
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaattcgggagtttagaaggatttctaaattcgcttacccaggtcgactccgaa
cgtacggacgtggttactgatcacggtgggaaagcgagtgatgaagtcaatcatagccca
gcagaagatgcttccaattccaaatccaaacgggagtatgggtacacggggtctttactt
ccgaaacgccccaaattggactcgccttcagtgccccctattggatttgtggatcttcag
aaacttgagtatgcaaccaagacacttcagaagaatgtgagacttatagtcacagaatct
ccagatattgacagcattgaaaaactcctcaactcttcgactcttgactctggagctaaa
gtcgatttgaaaaataataactacattaaagtggcttcgagattgaagtcgaaatacaag
attggaaagttacccatctttgatgaaatcacagctggtgatatcaaaatttcagacgaa
gaatttgacaaaattgcacaattaaacgattgcagcgattccgaagagtctcctacctat
ttgccggtagattcaagttccactcaagaaaagcgagtcttcactactggaatagataac
aagcatccaccgttaccctttatcaaggaccaaacgttgtatgagagagtatttgttcac
aagtctgttgtcaatggcaagacatatttggatcaaaacgatttgatcaacagccacaac
gagagactcgaatttctaggcgattcggtcttaaataacttggtgaccttgatcatctac
gacaagttcccaagtgcctcagaaggaaagttgaccaaaatgaggtcgcagttgatagat
aaccatacattgactcagttttccttcgaatacggatttgacaagagattaaaaacaaaa
actgacgaggagatcctcaaaactggagaccagaaagtgtatgcagatatctttgaagca
tacattggagccctctctgtagaaagaggattggatcttcgggaaatcaaggactggttg
gaaaagttgtatgcaccaaaacttgaagctttcaaagttaatttccttcaagaatctgtc
aacaaggaggcaaaatccgaattgtactccatcgttggaactgcatcatctcatccgcta
tatgtagttgtagaggaaggaaatggctcccatgattttgtcgtagaatgtagaatggga
aatgacgttctaggcagagcaaaggctccttctcaaaaggaggctggtttgagagccgcc
atggatgccttaaaaaatcgccaattgctagaaaagtactacaagatcagattggaaatc
gatagaaaagactccgtcaaatcgtcgaagtcgaagagatcaagagaagaagatgaagat
tctgattattcaatgaggactccgactccttcttctcctatcaagacgattatgtttcct
cttgtagcgtcagctgacgcacctattgataacaatgctaaaaataagttgtatgctgaa
attggtaaaagattgggagaggttccacagtacatagtttccagggccaataatgatata
gccgctgtttctttgagtataagaggtctagttgttgctacagctacagataaatcgaag
aagaaggctatggccagagcagccatggcaatacttgaaaacagctctgcattgaatgag
atttgtaagggaaccatatga
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