KEGG   Scheffersomyces stipitis: PICST_31740
Entry
PICST_31740       CDS       T01023                                 
Name
(RefSeq) WD repeat protein
  KO
K10570  DNA excision repair protein ERCC-8
Organism
pic  Scheffersomyces stipitis
Pathway
pic03420  Nucleotide excision repair
pic04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    PICST_31740
  09124 Replication and repair
   03420 Nucleotide excision repair
    PICST_31740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pic04121]
    PICST_31740
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_31740
Ubiquitin system [BR:pic04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     PICST_31740
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      PICST_31740
SSDB
Motif
Pfam: WD40 Nup160 YchF-GTPase_C DUF3920
Other DBs
NCBI-GeneID: 4838701
NCBI-ProteinID: XP_001384255
JGI: 31740
UniProt: A3LUE8
LinkDB
Position
4:1566321..1567697
AA seq 458 aa
MQALLLDRAFGKVAPLEFATTVTESYYSLLQQNALTRVFPPNCHTNAAINSLSLETEDYQ
YLLSGCADSSIKLWDLNSQSEIDNGSSTIHQDLNKQHSDYDIYDYDHPVQTFTNIATVPR
KSAHTFGISAIQWWPYDTGMFVSASFDHTVKIWDTNELTPVHSFDVTNRVYAIDLSGSES
PNGFSSSALVAVGSDQPFIRLLDLRSTSSAHTLTGHKGKTLAVKWHPLNPNLLSSGGFDG
EVKIWDIRRSKSCLCRLDMLRTNNQADSADNLAKASVKAHSGPVNGLVWNEQGTELYTAG
NDDKVRVWDMISSLAPPINKLVNFGPLTRNKYPQTIPIMLNPSYETELQYLLFPSDNSDL
FVFRTVDGKMVSRLSRKGTKNSGRTCSMVNAGPFTGKYYCGTIDGEIIAWSPHWEQPNIE
DLVEDTNEVDVQDVLSKRKLAEEARRNLEDDPYFNGEP
NT seq 1377 nt   +upstreamnt  +downstreamnt
atgcaggccctactcttggatagagcctttggtaaggtagcaccgcttgagtttgctacg
accgtaacggagtcgtactattctttactccaacagaacgcacttacacgcgtgtttcct
cccaattgtcatacaaatgcagctataaacagtctctcgttagaaacggaagactaccag
taccttttgagcggatgtgctgattcttccatcaagctctgggacctaaattcacaactg
gagatagacaatggttccagcaccatccaccaggatttaaacaaacagcattcggactac
gatatttacgactacgatcatccggtccagacttttaccaacattgctacagttccccgg
aagtctgcccatacatttggtatttctgccattcagtggtggccgtacgatacagggatg
tttgttctggccagttttgatcacactgtgaaaatatgggataccaatgaactcacaccg
gtacactctttcgatgttaccaatcgggtatatgccatcgacctctcgggaagcgagtca
ccgaatggcttttcttcctcggctttggtagctgtaggcagtgaccaaccattcattcgg
ctcttggacttgcgatctacttcaagtgcccatacgctcacaggtcacaaggggaagacg
ttggctgtcaaatggcatccgctcaatcctaacttacttctgtctggaggatttgacggt
gaagtcaagatttgggatatcaggcgaagcaagagttgcctttgccgcttggatatgctc
cgtaccaacaatcaagcagacagtgcagataatcttgctaaagcctcggtcaaagcccat
ctgggtcctgtcaatggtctcgtctggaatgaacagggtacagagctatatactgctggt
aacgacgacaaggtgcgagtctgggacatgatttcctctttggctccacctatcaataaa
ttggtcaactttgggccattgacacgaaacaagtatccccagactatccccattatgctt
aaccccagctatgagaccgagttgcagtatttattatttccctctgataatagcgacttg
tttgtattcagaactgttgacggcaagatggtttcgcgattatctagaaaaggcaccaag
aacagcggtaggacatgttctatggttaatgcagggccatttacagggaagtattattgt
gggacaattgatggagaaatcatcgcctggtcgccgcattgggaacagcccaatattgag
gatttagtcgaggacacgaacgaggtggatgttcaagatgtcttatccaagcgaaagttg
gctgaagaagctcgacgcaaccttgaggacgatccctactttaatggcgaaccgtag

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