Scheffersomyces stipitis: PICST_31740
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Entry
PICST_31740 CDS
T01023
Name
(RefSeq) WD repeat protein
KO
K10570
DNA excision repair protein ERCC-8
Organism
pic
Scheffersomyces stipitis
Pathway
pic03420
Nucleotide excision repair
pic04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
PICST_31740
09124 Replication and repair
03420 Nucleotide excision repair
PICST_31740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pic04121
]
PICST_31740
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_31740
Ubiquitin system [BR:
pic04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
PICST_31740
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
PICST_31740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Nup160
YchF-GTPase_C
DUF3920
Motif
Other DBs
NCBI-GeneID:
4838701
NCBI-ProteinID:
XP_001384255
JGI:
31740
UniProt:
A3LUE8
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Position
4:1566321..1567697
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AA seq
458 aa
AA seq
DB search
MQALLLDRAFGKVAPLEFATTVTESYYSLLQQNALTRVFPPNCHTNAAINSLSLETEDYQ
YLLSGCADSSIKLWDLNSQSEIDNGSSTIHQDLNKQHSDYDIYDYDHPVQTFTNIATVPR
KSAHTFGISAIQWWPYDTGMFVSASFDHTVKIWDTNELTPVHSFDVTNRVYAIDLSGSES
PNGFSSSALVAVGSDQPFIRLLDLRSTSSAHTLTGHKGKTLAVKWHPLNPNLLSSGGFDG
EVKIWDIRRSKSCLCRLDMLRTNNQADSADNLAKASVKAHSGPVNGLVWNEQGTELYTAG
NDDKVRVWDMISSLAPPINKLVNFGPLTRNKYPQTIPIMLNPSYETELQYLLFPSDNSDL
FVFRTVDGKMVSRLSRKGTKNSGRTCSMVNAGPFTGKYYCGTIDGEIIAWSPHWEQPNIE
DLVEDTNEVDVQDVLSKRKLAEEARRNLEDDPYFNGEP
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccctactcttggatagagcctttggtaaggtagcaccgcttgagtttgctacg
accgtaacggagtcgtactattctttactccaacagaacgcacttacacgcgtgtttcct
cccaattgtcatacaaatgcagctataaacagtctctcgttagaaacggaagactaccag
taccttttgagcggatgtgctgattcttccatcaagctctgggacctaaattcacaactg
gagatagacaatggttccagcaccatccaccaggatttaaacaaacagcattcggactac
gatatttacgactacgatcatccggtccagacttttaccaacattgctacagttccccgg
aagtctgcccatacatttggtatttctgccattcagtggtggccgtacgatacagggatg
tttgttctggccagttttgatcacactgtgaaaatatgggataccaatgaactcacaccg
gtacactctttcgatgttaccaatcgggtatatgccatcgacctctcgggaagcgagtca
ccgaatggcttttcttcctcggctttggtagctgtaggcagtgaccaaccattcattcgg
ctcttggacttgcgatctacttcaagtgcccatacgctcacaggtcacaaggggaagacg
ttggctgtcaaatggcatccgctcaatcctaacttacttctgtctggaggatttgacggt
gaagtcaagatttgggatatcaggcgaagcaagagttgcctttgccgcttggatatgctc
cgtaccaacaatcaagcagacagtgcagataatcttgctaaagcctcggtcaaagcccat
ctgggtcctgtcaatggtctcgtctggaatgaacagggtacagagctatatactgctggt
aacgacgacaaggtgcgagtctgggacatgatttcctctttggctccacctatcaataaa
ttggtcaactttgggccattgacacgaaacaagtatccccagactatccccattatgctt
aaccccagctatgagaccgagttgcagtatttattatttccctctgataatagcgacttg
tttgtattcagaactgttgacggcaagatggtttcgcgattatctagaaaaggcaccaag
aacagcggtaggacatgttctatggttaatgcagggccatttacagggaagtattattgt
gggacaattgatggagaaatcatcgcctggtcgccgcattgggaacagcccaatattgag
gatttagtcgaggacacgaacgaggtggatgttcaagatgtcttatccaagcgaaagttg
gctgaagaagctcgacgcaaccttgaggacgatccctactttaatggcgaaccgtag
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