Scheffersomyces stipitis: PICST_32908
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Entry
PICST_32908 CDS
T01023
Symbol
UFD4
Name
(RefSeq) ubiquitin--protein ligase
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
PICST_32908 (UFD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pic04121
]
PICST_32908 (UFD4)
Enzymes [BR:
pic01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
PICST_32908 (UFD4)
Ubiquitin system [BR:
pic04121
]
Ubiquitin ligases (E3)
HECT type E3
PICST_32908 (UFD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Motif
Other DBs
NCBI-GeneID:
4840071
NCBI-ProteinID:
XP_001385872
JGI:
32908
UniProt:
A3LXR1
LinkDB
All DBs
Position
6:complement(931859..936967)
Genome browser
AA seq
1702 aa
AA seq
DB search
MANTKPSQIGAEDSGNQRENSPDVAYHSANEEQDDNGIDDDEDDSLQRLSEQAQRRRSSQ
RGFHDEHVRDTYEDTDEHDDDDAEGVSGGNDDMSDVDAMEPGDFLRRLIQPRLSRSASSR
NEQDHSSTGSAGDEDEAMDEDDPRAEFLRAIGSLSSSGSGSHLSSGSGQVFVDVVQRLMG
GGIMFGGGMNRESSEIDGLINNLNQREDSYIILETLNELSERLLMMNGITAERLIPANKL
AKSLVNIMEDTNLSEELEIQLVTCRCLYNFLEVNQDFVHDALNNHAIEALCTKLMEVSYI
DLTEQALQTLEMISRDPISHNSIIANNGLRACLQYMDFLTIHAQRKCLSVVSNSCTNITV
ANFQKVKDIMDNISEVVRSHTDSVVVENAWLTISRIIISFKTKPELLEELFSNKELLLKD
FTQVIYISCNKSSNTSSENDSSKVALNYSSCLSLIKSLIILSSTGVEISRILLSECSIGE
VIVKSLNKYSKFKSNTSQSENANLDQSFIKTTNESISIEALMAAPKELLSQFLNLIGYLL
PISYSPSETPFLRNNHDDFEEKQKLNKSRVELCKDIIPRQYCDFVNDIWHLLMCSFQATM
DYEIRRKVFIDIFRIVSFSSESNLSKIKDVNLITNILASVANQSKASIGRNFSNTARLAK
LFSKEEDLDMLSSDDETFEGNLDEHDAIVNEDEEEIAGIEEEIDEGLLQEDADNIEEEDS
FDDNDNEDEEDHDENDDREDDEDEDEYEEVGGLPYPQTENSADDISKLNSNVLLLSGLLI
ARLLIEKAPQTFLPDFEREGLISDVLSIVKSLTGNVEEEEATGSSTRVHSISASYSNKYI
DTEFTKEYEYKLTNSSILYKIYNVCSIIEKSYLKLKFSGNSSIPEHMQILNEIDSKLRDH
KYLKTLSFDEWKLIWDKLEFALNGASSNIQISSFELISSGIIESLSQVFNSESYDFGFEF
SDCYKAFISVFFVDKARGSSSFLASLQEALTRTESFQIISSGSSSIVSLGSFFQNDNSQT
AIMAKQIKLKLVASENETDSKLPSNMENMILSVHAIATFKSVDTYLKQRFKFIEELSGRR
DRSNGDLGNDDEDVSKRNPFNIEFLINGESVPNEITIYGAIYRSLQNKPDEIVDPSRIWS
TVHNISYRRISSAVTKESKLMNYSFHIKDNELDIYDKTTIYILKLLKVLFEMNAFVKINI
PNTVAIPASNFMNWKLTVKLNRQLEEPLVVASGTLPGWSIHVTKQFPFIFPLETRIFFLQ
STSFGYSRLIHQWQIRTNQGNDENNTNNNNNQRAQLGRPTRHKVRISRKFILQSAIKVLG
LYGSTPRILEIEYFDEVGSGLGPTLEFYATVSKEFSKKKLKLWRDNDPSEVDDEAYVSNA
LGLFPSPLDKHQISTENGRKVLSFFSSLGKFVARALLDSRIVDFNFNPVFLKLVQYFNLH
GVQRINHRNLKKMTNISSLRMVDPALADSVEHLLKYVKQFPQVGEIERDSIVIDGSTIKD
LSLYFELPGYPEFELIAGGSEIQVTATNLELYINRILESTLFTGIVHQAKSFMDGFSNVF
PVNTLIIFSSEELAGLFGGAEEDWSIDTITSAVYANHGFTKESDAIKSLITILVQFNEEE
RRAFLQFLTGAPKLPIGGFKALRPELTVVRKHAEEGLKDDDYLPSVMTCANYLKLPNYSS
EDLMRKRLLQAINEGAGAFLLS
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atggctaataccaaacccagccagatcggtgccgaggattctggcaaccaaagggagaat
tcgccagacgtcgcctaccattctgccaacgaagaacaagatgataatggcatcgatgat
gatgaagatgactctttacagagactttcggaacaagcccaaaggcgaagactgagccaa
agaggcttccacgatgaacacgttagagatacttacgaagatactgacgaacacgatgat
gacgacgctgaaggcgtcagtggtggtaatgacgacatgagcgacgtagatgcaatggaa
cccggtgacttcttgagaagactaattcaaccaaggttgagtaggagtgccagttcgaga
aatgaacaagatcacagcagtaccggaagcgctggagacgaggacgaagcaatggatgaa
gatgatcctcgagccgagtttttgcgtgccattggatctttatcttcgtcagggagtggt
tcacatttgtcttctggtagcggccaggtttttgttgacgtagtgcaaaggctaatgggc
ggtggaataatgtttggaggaggaatgaatagggaaagtagtgaaattgatggattgatc
aacaacttgaaccaaagagaagattcgtacataattcttgaaactttaaacgagctatca
gagagattacttatgatgaatggtatcacagcagaacgccttattcctgctaacaagttg
gccaagagcttggtaaatataatggaagatacaaatttgtcggaagagctagagatacaa
cttgttacttgtcgttgtctctataattttctagaggtcaatcaggattttgtccatgat
gccctcaacaaccatgcaattgaagctttgtgcaccaagctcatggaggtaagctatatt
gacttaacagaacaagctttgcaaacactagagatgatttctcgtgatcccatttctcac
aacagtattattgccaacaatggtctaagagcatgcctacaatacatggattttttgacc
attcatgcccaaaggaagtgcttgtcagttgtatccaattcttgtacaaatattacagtt
gcaaacttccagaaggtaaaggacatcatggataatatctctgaagttgtcagaagtcac
actgattccgtggttgtggagaatgcatggctaaccatttctcgaatcattatcagcttc
aagaccaagcccgagttgttagaggaattatttctgaacaaagaattattgttgaaagat
ttcacacaggttatttacatcagttgcaacaagtcactgaatacatcatctgaaaatgat
tcgtccaaagttgcattaaattacagttcgtgcttaagtttaatcaaatctttgataatc
ttgagtagcaccggtgttgaaatctctagaatcttgttgagcgaatgctcgataggggag
gttatcgtcaaatctcttaacaaatactctaagtttaaatctaatacgtctcaatctgag
aatgcaaatttggaccaatcatttataaagactaccaatgaatcaatatcaatcgaagct
ttaatggctgctcccaaagagctcctttcgcagtttctcaatttgatcggctatttattg
ccaatcagctattcccctagcgaaaccccattcttgcgaaataaccatgacgacttcgaa
gaaaagcagaaattgaataagtctagagttgaactatgtaaggatatcattccaagacaa
tactgcgattttgttaatgacatttggcatttactcatgtgtagtttccaagctacaatg
gattatgaaattcgcagaaaagttttcattgatatttttagaattgtcagcttcagttca
gaatccaacttaagcaaaataaaagatgtcaacttgatcacaaatatattggcatcggtt
gccaaccaaagtaaagcactgattggacgcaacttctccaatacggcacgcttagcaaaa
ttgttttctaaggaggaggatctagacatgttaagcagcgacgacgagacatttgaagga
aatttggatgagcatgatgcaattgtgaacgaagatgaagaggaaattgcaggaattgaa
gaagaaatcgacgaagggttgttgcaagaagacgcggataatattgaagaagaagattct
tttgatgacaacgacaatgaggacgaagaagatcacgatgaaaatgatgatcgtgaagat
gatgaggatgaagacgaatacgaagaagtcggcggattaccatatcctcaaactgagaat
tcagcggatgatatatcaaaattgaattcaaacgttctactacttagtggattgcttatt
gcaaggcttcttattgaaaaagcacctcaaacattccttcctgatttcgaaagggagggc
ttaattagtgatgttttactgattgtcaaaagtttgacgggtaatgtcgaagaagaagag
gcaacaggaagcagtacaagagttcattccatttctgcaagctacagcaacaaatacatt
gatacagaattcacaaaagagtacgaatataaattgacaaatagttccatactatacaag
atttacaatgtttgctccattatcgaaaagtcatacctaaaacttaagttcagtggcaat
tcatctattcctgagcacatgcaaatattaaatgagatagactcgaaactcagagatcac
aagtacttaaagaccctctcttttgacgaatggaagttgatttgggacaaattagaattt
gctctcaatggtgcatcttccaatattcaaatttctagttttgaattgatttcatcggga
attattgagtctttgtctcaagtcttcaattcagaatcctatgattttggatttgaattc
agcgattgttacaaagctttcatttcagttttctttgtggacaaagcgcgaggttcatcc
tcattcttagcatcacttcaggaagctcttacaaggaccgaatcgtttcaaattatctct
tctggaagttccagtattgttagtctaggttcgtttttccagaatgataatagccaaact
gctatcatggccaagcaaatcaaattgaagttggttgcatcggaaaatgaaactgacagc
aaattaccttcaaacatggaaaacatgattctctctgttcatgcaattgctactttcaag
tcagttgacacctatttgaagcaaaggtttaaatttattgaagaacttagtggaagaaga
gatcgctcaaacggcgatcttggaaatgacgacgaagacgtctcgaagaggaatcctttt
aacatcgaattcttaatcaacggcgaatcagttcccaatgagattaccatttatggtgcg
atttataggtcattgcagaacaagccggatgaaattgttgatccatcaagaatatggtca
actgttcataatatatcatacagaagaattagctctgcagtgactaaggaaagtaaatta
atgaactacagtttccatatcaaggacaatgaattagacatctatgacaagacaacgatc
tatatcctcaaattgttgaaggtcttgttcgagatgaatgcatttgtgaagatcaatatt
cctaatacagttgcaattccagccagtaatttcatgaactggaagctcacagttaaatta
aacagacagttggaagaacccttggttgttgccagcggtacactacctggttggagcatc
catgttacgaagcaatttccgttcatttttcctttggaaactagaatattctttttgcag
tctacgtcatttggttactctcggttgattcatcaatggcaaattaggacgaaccaagga
aacgatgagaataatacaaataataacaacaatcaaagagcacagttaggtcgtccaacc
agacacaaggtgagaatatctagaaaatttatacttcagagcgcaattaaagttctcggt
ctttatggctccacccccagaattttggaaattgaatatttcgacgaggtaggatcaggt
ttggggccaacattggaattctacgcaactgtctccaaagagttctcgaagaagaaattg
aagctatggagagataatgacccactggaagttgatgatgaggcatatgtttcaaatgcc
ttaggtttattcccttccccattggacaaacaccagatttctactgaaaatggtagaaag
gtattgtctttcttctcgtcattgggaaaatttgtcgctagagcgttgctagattctaga
atcgtggattttaactttaatccagttttcttgaaattggtgcagtacttcaacctccac
ggcgtacagaggataaatcacaggaacttaaagaaaatgacaaatatttctagtttgaga
atggttgatccagccttggctgattcagttgaacatttgcttaagtatgtgaaacaattt
ccacaagttggagagatagaacgcgattccatcgtgattgatggctctaccattaaggac
ttatcactttactttgaattgcctgggtaccctgagtttgaattgattgctggtggtagc
gagatacaagttactgcaacaaatcttgagttgtatatcaatagaattttggagtctacc
cttttcactggaattgtgcatcaagccaaatcatttatggacggattttcaaacgtattc
cctgtaaatacgttaataatattctcgtcagaggaattggctggtttgtttggtggagca
gaagaagattggtcaattgatactattacttcagctgtgtatgcaaatcacgggtttaca
aaggaatctgatgctatcaaatcgctaataacaatactcgtgcaatttaacgaagaagaa
cgcagagcattcttacaattccttactggagcaccaaaattgcctattggcggcttcaag
gctcttagaccggagctcacggttgttagaaagcatgctgaagaaggcttgaaggatgat
gattacttaccgagtgtgatgacttgtgcaaattacctcaagctcccgaattattcatca
gaagacctcatgaggaaaagattgcttcaagctattaatgaaggcgctggtgctttcttg
ctctcctag
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integrated database retrieval system
