Scheffersomyces stipitis: PICST_33319
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Entry
PICST_33319 CDS
T01023
Name
(RefSeq) predicted protein
KO
K12856
pre-mRNA-processing factor 8
Organism
pic
Scheffersomyces stipitis
Pathway
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_33319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pic03041
]
PICST_33319
Spliceosome [BR:
pic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PICST_33319
Complex C
U5 SnRNP specific factors
PICST_33319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
4840643
NCBI-ProteinID:
XP_001386263
JGI:
33319
UniProt:
A3LYV9
LinkDB
All DBs
Position
7:complement(316805..324031)
Genome browser
AA seq
2408 aa
AA seq
DB search
MGRKLPPPPPPPPPPRAQNRNGVIGRVNPRHPPPPPPPPPSSSASVPSSTAINRNPPPLR
PPPPPPRPPTSGLAEKRIKTSDNVTSEELDARSRRWLQLQKSRYKSISSKGDAPATGQKP
QMPPEHLRKIMIDHGDLSSKKVASDKRAHLGSLRYVPHAILKLLENMPQPWEQSKDVKVL
YHISGAITFVDEVPRVIEPVYTAQWATVWSAMRREKRDRRHFKRMRFPPFDDEEPPLDWS
ENLEDVEPQDSIRLPLGSQRESAVIDWMYDGKPLMDDPNIVNGDSYRLWNLDLAKMACLY
RLSKPILSERSGLTNVHLFDKNALFTAKSLNVALPGGPKFEPLFKDKSENLATEDFTEFN
SIDRIIIRIPVRTEYKVAFPYLYNSFVKGVHVSWYHDPVKCYVESSDPVATSFTFQHYFN
SITQLKCTGPDLESKDLDLCGLVPFMGKEYDEQSDCYVDTEVEPEGTSDALQLWWAPYPF
NRRSGRMIRAEDVALTKSWYKERAPRDSNIKVRVSYQKLLKNYVLNELHNPPGKRTGSMS
RNRSKAKLLKNLRATKYFQQTNIDWVEAGLQVCRQGFNMLNLLIHRKGLTYLHLDYNFNL
KPTKTLTTKERKKSRFGNAFHLIREILRVIKIVVDSHVQFRLGNVDAFQLADGIYYILNH
LGQLTGIYRYKYKVMHQIRACKDLKHIVYSRFNKMIGKGPGCGFWQPAWRIWISFLRGIV
PLLERWLGNLLARQFEGRRSNDVAKTITKQRVDSYYDLELRSQVMHDILDMIPDGLKQNK
SKTILQHLSEAWRCWKANIPWNVPGLPTPIENIIRRYIQAKADGWVSVAHYNRERIRQGT
TVEKTVAKKNLGRLTRLWIKNEQERQSNFAKDGPYVSPNEAVAIFQAMVNWLESRKFSPI
PFPPLSYKHDTKLLVLALENLKESYNPEARLNSAQREELALIEQAYDNPHECLARVKKFL
LTQRIFKEVGLEMMDYYSHLVPTYAVDPLEKITDAYLDQYLWYEADKRKLFPNWVKPSDD
EIPPLLVYKWVQGINNLQNVWNTSDGECNVMLETSLERLTEKIDFTLLNRLLRLIVDPNI
ADYITSKNNVNLSYKDMNHINQFGLLRGLQFASFVYQYYGLVIDLLILGPERASEISGPA
AQPNSFLQFKDIDAETSSPIRLYSRYLDKIHIFFRFDNESANDLIQDYLSENPDTNFENV
VGYNNKRCWPKDSRMRLMRHDVNLGRAVFWEIASRIPRSLTSIEWKDSFASVYSRDNPNL
LFTMCGFEVRILPKFRAKEEISSQEGVWDLIDQSTKERTARAYLQVSQDEIDKFNNRIRQ
VLMSSGSTTFTKVAAKWNTALIALFSYFREAAVSTEALLDVLVKCETKIQNRVKMGLNSK
MPSRFPPAVFYTPKELGGLGMLSASHILIPSSDLRWSKQTDTGITHFRAGMSHEEEKMIP
TIFRYITSWENEFLDSQRVWAEYAIKRAEALEQNRRLTFEDMENNWDRGLPRISTLFQKD
RHTLAYDKGHRIRRQFKQFSLARFNPFWWTNNHHDGKLWNLNAYRTDVIQALGGIETILE
HTLFKGTGFDSWEGLFWEKASGFEDSLKFKKLTNAQRSGLSQIPNRRFTLWWSPTINRAN
VYVGFLVQLDLTGIFLHGKIPTLKISLIQIFRAHLWQKIHESIVQDLCQVLDKELEVLQI
NAVEKQAIHPRKSYKMNSSCADIVLSSTYKWNVSRPSSLNDKNDNMELQANKFWIDVQLR
YGDYDSHDISRYARSKFLDYTTDSSSTYPSPTGIVIAIDLAYNMYDAYGNWIPGLKPLVQ
NAMKEVMKANPALYVLRERIRKGLQLYQTQPQEAYLNSNNYAELFNNETQLFVDDTNVYR
VTVHKTFEGNLTTKPINGSIFILNPKSGQLFLKVIHTSVWSGQKRLGQLAKWKTAEEIAA
LIRSLPREEQPKQLIVTRKGMLDPLEVHMLDFPNISIRPSELHLPFASAMKIDKLADIVL
KANEPQMVLFNLYDDWLNDISPYTAFSRVILLLRAMGIDQENTKLILHPDANVVTQDYHI
WPTLTDEQWIDVESQLRDLILSDYSKKHNVNVQSLTQSEIRDLILGQDIRAPSVKRQEIA
EIEAAPEESTNKELTALKTTTTNVHGEEIVTVTTTNYEQQTFSSKNEWRNRAIASSNLHL
RSKNIYVSSENFVDDGSFTYILPKNILKKFIQISDLRIQVGAFLYGKSPVDNNEVKEIKC
IAIVPQLGNSTSIQFPKQLPDQVGPLENLELLGWIHTQSQDLGYLSPIDITSTSSFFDNY
DPNFITLAVSFTPGSVSLAAFELSEEGFKWGKTNTDFMSPNPTGFSTNFGKKGQLILSDR
IAGSFAVPDDNLWNYFFTGAVWNPNNLYVLKLDVPLSFYNELHRPIHFTTFNEIENNDLE
ADQENVFA
NT seq
7227 nt
NT seq
+upstream
nt +downstream
nt
atgggccgtaagctacctccaccgcctccaccgcctccacctccaagggcacaaaataga
aatggagtgataggaagagtaaatcctcgtcatccgccgccaccaccaccacctcctcct
tcatcatctgcatcggtaccctcatctactgctataaacagaaatccaccaccactccgt
cctcctccaccaccacctcgtcctccaacttcaggtcttgcagaaaagagaatcaaaact
tcagataatgttacttcggaagaactcgatgccagatctaggagatggctccaattgcag
aaaagcagatacaagctgatttccagcaaaggcgacgctcccgcaacaggacagaaacct
caaatgcccccagaacacttgagaaaaattatgatagaccatggagacttgtcatcaaag
aaagtagcttccgataagagagcccatttgggttcactcaggtatgttcctcatgccata
ttgaagctattggaaaatatgccccagccatgggaacagtcaaaggatgtcaaagtacta
tatcacataagcggagccattacctttgtagacgaagttccgagagtaattgaaccagtc
tataccgcacagtgggcaactgtatggtcagctatgagaagagaaaagagagatagacga
cacttcaagagaatgagatttccaccttttgacgatgaagaaccacctttggactggctg
gaaaaccttgaagatgtcgagccacaggattcaataagattgcccttgggttcccaaagg
gaatctgctgtaattgattggatgtacgatggcaagcctctaatggatgatccgaacata
gtcaatggtgattcatacagattgtggaatttggaccttgccaagatggcatgtttgtac
aggttatccaagccgattctcagcgaaagatcaggtctaacaaatgtgcatttgtttgat
aaaaatgctctcttcacggccaaaagtctcaatgttgcacttccaggtggtcccaagttt
gagcctcttttcaaagacaagagcgaaaacctagcaacagaagactttactgaattcaat
tctatcgatagaattattatcagaatccccgttagaacggagtacaaagtggccttccca
tatttatataattcgtttgttaagggtgttcatgtgtcatggtatcacgatccggtcaaa
tgttacgtggaaagttctgacccagttgccacctcatttacatttcaacactatttcaac
tcaattactcaattgaaatgtactgggccggatctagagagtaaagatttagatttgtgc
gggcttgttcctttcatgggtaaggaatacgatgagcaatctgattgctacgtggataca
gaagttgaaccagaaggtacttctgacgctttacaattgtggtgggctccttaccctttc
aaccgtcgaagcggaagaatgatcagagcagaggacgtcgcattgacgaaatcctggtac
aaagaaagagctcctcgagatagcaatatcaaagtccgcgtatcttatcaaaagttgttg
aaaaattacgtcttaaacgaattgcataatccacctggaaaaagaactggttccatgtct
agaaatagactgaaagcgaagctattgaaaaatctcagagccaccaagtatttccaacaa
acaaacatagactgggttgaagctggtcttcaagtatgtcgtcaaggctttaatatgttg
aacttgttaattcatagaaaaggtttaacatatttgcatcttgactataactttaacttg
aaaccaacaaaaacattaacaacaaaggaaagaaaaaagtccagattcggaaatgccttc
cacttaattcgtgaaattttaagagtcatcaagattgttgtcgattcacatgttcagttc
agattagggaatgtggatgccttccaattggccgatgggatatattatattttaaaccat
ttgggtcagttaacaggtatttatcgctataagtacaaggttatgcaccaaattcgtgct
tgtaaggacttgaaacacattgtttattcaaggtttaacaaaatgataggtaaaggtcct
ggctgtggattctggcaacctgcttggagaatttggatttctttcttgagaggaattgtt
ccgttattggagaggtggttgggaaaccttttggctagacaatttgaaggaagaagaagc
aatgatgtagccaagactattacaaagcaaagagtagactcatattatgatttagagtta
cgatctcaagtcatgcatgacatcttagacatgattcctgatggtctcaagcagaataag
tcaaagacaatactacagcatctaagtgaagcttggagatgttggaaagccaatatacct
tggaatgtacctggtttacctacgcctatagaaaatattatcagacgctacattcaagcc
aaggctgatggatgggtttcagtcgctcactacaacagagaaagaattagacaaggtact
actgttgagaaaacagttgccaaaaagaacctaggaagattaactaggttgtggataaag
aatgaacaagaacgacaatctaatttcgcaaaagatggaccatatgtgtcgcccaacgaa
gctgttgccatttttcaagctatggtcaattggctagaaagcagaaagtttagcccaatt
ccatttccacccttgtcatataagcatgatacaaaattgttggtcttggcattggagaac
ttgaaagagagttataatcccgaagcaagattgaattcggctcaaagagaggagttggct
ctcattgaacaagcatatgacaatcctcatgaatgtttagctcgtgttaagaaattttta
ttaacacaaagaatatttaaggaggttgggcttgaaatgatggactattatagccacctt
gttcctacttatgctgttgacccactagagaaaattacggacgcatatcttgatcaatat
ctctggtatgaagcagacaaaaggaagcttttccctaattgggtaaaacctagtgatgac
gagattcctccattgctagtttacaagtgggtccaaggtatcaacaatttgcagaacgta
tggaatacttctgatggggaatgcaatgtcatgttggaaacatcgttggaaagattgacc
gaaaagattgatttcactttgttgaacagacttcttaggttaattgtggatccaaatatt
gctgactatataacttcaaagaacaatgttaacctaagttataaagatatgaatcatatc
aatcaatttggattgcttagaggattacaatttgcttccttcgtttatcagtactacgga
ttggtgattgacttattaatattgggacctgaacgtgcttcagaaatttctgggccagcg
gcacaaccaaactcattcttacaatttaaggatattgacgcagaaacttcaagccctata
aggttgtattctcgttatttggataaaattcatattttcttccggtttgacaatgaaagt
gccaatgatttgattcaagattatttatcagaaaatccagatacgaactttgaaaacgtt
gtgggatataataataagaggtgttggccaaaggactctcgtatgaggttaatgagacat
gatgtgaatcttggaagggcagtcttttgggaaattgcttctcgcattccaaggtcattg
acctccattgaatggaaagactcgtttgcttctgtttattctagagataaccccaatttg
ttattcaccatgtgcggatttgaagttagaatattgcctaaattcagagccaaagaagaa
atctcttctcaggaaggggtatgggacctaattgatcaaagtacaaaggaaagaactgct
agagcatacttgcaagttctgcaggatgaaattgataagttcaataatagaattcgtcaa
gttctaatgtcttctggttcgaccactttcacaaaggtagctgcaaagtggaatacagca
ttaatcgcacttttttcgtatttccgtgaagctgctgtttcaacagaagctttgcttgac
gttttggttaaatgtgaaacgaaaattcaaaatagagtaaagatgggtcttaactctaaa
atgccttccagattccctccggcagttttctatactccgaaggagttgggaggtcttggt
atgttgagtgcatcgcatatattgattccatcttcagatctcagatggtctaagcaaact
gatacaggaatcacccatttcagagctggtatgagccatgaagaagaaaagatgattcct
accatctttagatacataactagttgggaaaatgagttcttagattcgcaaagggtttgg
gctgagtacgctattaagagagctgaagctttagaacagaataggcgattaacttttgaa
gacatggaaaacaactgggatagaggtttgccaagaatcagtactcttttccagaaagat
agacacactttggcttatgacaagggtcatagaatcagaagacaattcaagcaattcagc
ttggccagattcaatcctttctggtggacaaataatcatcatgacggaaaattatggaat
cttaatgcatatagaacagatgtcatccaggcacttggtggtattgaaactatccttgaa
cacactcttttcaagggtacaggttttgactcttgggaaggattattttgggaaaaggct
tctggttttgaagattcgttgaagtttaagaaattgacaaatgctcagcgttcaggttta
agtcaaattccaaatcgtcgatttacactttggtggtctcccacgattaaccgtgctaat
gtttacgtgggtttcttagttcaattagatctcacggggattttcttgcatggcaaaatt
cctactttaaagatttcgttgattcagattttcagagctcatttgtggcagaaaattcac
gaaagtatagtacaagatctttgccaggtgcttgacaaagaattggaagtacttcaaatt
aatgctgttgaaaagcaggccatccatccacgtaagtcttacaagatgaactcatcatgt
gccgacattgtactttcaagtacctataagtggaatgtttctagaccctcttccttgaat
gataagaatgataacatggaattacaagcaaataaattttggattgacgttcaattaaga
tatggtgattatgattcccatgatatttcaaggtatgctagatcaaaattcttggactac
acaactgatagctcaagtacatatccatcgcctacaggtatagtcatagcaatagattta
gcatacaatatgtatgatgcctatggaaattggatccctggattgaagcctttggttcag
aatgctatgaaagaagtaatgaaggcaaatccggcattgtatgttttgagagaaagaatc
cgcaagggtttgcaattgtatcagacgcaaccgcaagaggcgtatttaaattcaaataat
tatgcggagttgttcaacaacgaaactcaattgtttgttgatgatacaaatgtttacaga
gtgacagttcataagacatttgaaggaaacttgaccacaaagccaatcaatggttctatc
tttatcttgaatcctaaatctggacagttgttcttgaaagtcattcatacatctgtctgg
tcgggacagaaacgtttgggtcaacttgccaagtggaagacggccgaagaaatagcagct
ttgattagatcattgccaagggaagagcaacctaagcagttgattgtaacaagaaaggga
atgcttgatcccttagaagttcacatgttggatttcccgaacatttccattagaccttct
gaattacaccttccttttgcttcggcaatgaagattgataaacttgcagacattgtgttg
aaagcaaatgaaccacaaatggttttgttcaacttgtatgatgattggcttaatgatatc
tcgccatataccgccttttcgagagtgattttgctccttagagcaatgggtattgatcaa
gaaaacaccaaattaatcttgcatcctgatgccaatgttgttactcaggattaccatata
tggccaactttgaccgacgaacaatggatagatgttgagtcgcagttgagagatttgata
ctttcagattactcaaagaagcataatgttaatgtccaatccttaactcaatctgagata
agagatttgattttgggacaggatatcagagcaccgtctgtgaaacgacaggaaatcgcg
gaaattgaagctgctcctgaagagtctaccaataaagagttgacagcgttaaagacaaca
actaccaatgttcacggggaggaaatcgttactgttacgacaactaattacgagcaacag
accttttcttcaaagaatgaatggagaaatagggcaattgcatcaagtaacttgcatttg
cgaagtaaaaacatctacgtttcttccgagaattttgtcgatgatggttcattcacttat
attcttccaaaaaatattctaaagaagtttattcaaatttcagatttaagaatccaagtt
ggggcttttctttatgggaagagtccagttgataacaatgaagtgaaggaaatcaagtgt
atagccattgttcctcaacttggaaatagcacctcgatccaatttccaaaacaattacca
gatcaagtgggaccattagaaaaccttgaattgttgggttggatacatacacagagtcaa
gatcttggatatttatctccaattgatatcacttcgacatcgagcttttttgacaactac
gatcccaatttcatcaccttggccgtttcatttaccccgggatccgtgtcattggcagct
tttgaactaagcgaggaaggtttcaagtggggaaaaacaaatactgatttcatgtcgcca
aacccaacggggttttcaacaaattttggcaagaaggggcaattaattttgtctgacaga
attgctggatcctttgctgtacctgatgacaatttatggaactatttcttcactggtgca
gtttggaatccaaataatttatacgttctcaaattggatgtgccattgtcattctataac
gaattgcatcgtccaattcatttcactacatttaatgaaattgagaataatgatctcgaa
gcggaccaagaaaatgtatttgcatag
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