Scheffersomyces stipitis: PICST_36041
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Entry
PICST_36041 CDS
T01023
Symbol
SNU114
Name
(RefSeq) ATP dependent RNA helicase and U5 mRNA splicing factor
KO
K12853
114 kDa U5 small nuclear ribonucleoprotein component
Organism
pic
Scheffersomyces stipitis
Pathway
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_36041 (SNU114)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pic03041
]
PICST_36041 (SNU114)
Spliceosome [BR:
pic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PICST_36041 (SNU114)
Complex C
U5 SnRNP specific factors
PICST_36041 (SNU114)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFG_IV
EFG_C
MMR_HSR1
EFTUD2
GTP_EFTU_D2
G-alpha
EFG_III
Ras
Septin
EF-G_D2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
4838865
NCBI-ProteinID:
XP_001384231
JGI:
36041
UniProt:
A3LU88
LinkDB
All DBs
Position
4:1418084..1421074
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AA seq
978 aa
AA seq
DB search
MDDDIYDEFGNLIGDAFDSDAESSDESALENEVEPQDEEVDIESDTEEKENGIDLKMNVD
ETFAEDVKQIIVDPAEPPQDEPVIQPRVEKKLKVDFTDNIKSDSKENGEASIMAGLPEVI
YSREYMIQTMTSLPERIRNIALVGNLHSGKTTFVDSLVLHTHSPSIGLKKSLKNFKPLRF
MDNHKLEIDRGTTIKTSPITLMLQDLKNRSAIFNILDTPGHADFEDETIAAIAAVDGIIL
VVDVVEGITARDRSLVDHAVKENVPIVLMLNKIDRLILELKLPVRDCYQKLNYIVEDVNQ
RLSQNEFIANYTHSTTVSPVENNVIFASSTFEFTFSLISFADLYLRKSGITGVDIEEFSK
RLWGDYFYDKKTNKFSTNSQDGKLSRSFVSFILEPIYKIITYTLVSEPGDTRLPSLLWDN
FGVKLNKQQYKQDPQILLKDVFKAIFDDNKGFVHSVNSSISNPRISQIRGINSQNLPDDS
VLARVVKLVESSDASQFLSIVRVFKGELIVGSKIKVLGENYAEDNEDYKIQTVEELYLSG
GRYKVPIDVAGEGAIVIVGGIDSIVNKGATILAANKSLENCEIFSQPNYGSKSVFKVAVE
PANPSELPKMLEGLRKINKSYLAAVINVEESGEHVILAPGELYLDCVLHDLRLFFTDNLE
IKVSDPMTKFSETVVEGSITKITTSTPSGNNSISIIAEPLNDSKLSYAIESGSIDLSQPA
KITSKILRKDFGWDALAARSVWCFGPEGLQSPSLLLDDTLEEETDKKLLYSVKDSICQGF
KWSISEGPLCNEPIRNTKFKILDAVISGSEIHRSGTQIIPMTRKACYAGFLTATSRLMEP
IYSVTVVCTHSAKALVSKLLDGRRGNIIKDWPVPGTPLFELEGHVPVIESVGLETDIRIR
AQGQAMCYLTFSNWQVVPGDPLDPDCFLPSLKPVPAESLARDFVMKTRRRKGMTGEPSLQ
KYIDTNLYTRLREKGIVR
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgacatctatgacgagtttggaaacttgataggtgacgcttttgactcggat
gcggagtcactggacgaatctgcattagaaaatgaagtagaaccacaagatgaagaagta
gatattgagtccgatacagaagaaaaggaaaatggaattgacttgaaaatgaacgttgac
gaaacattcgccgaagatgtcaaacaaatcatagtagaccccgctgaaccacctcaagat
gagcctgttattcagccaagagtagaaaagaagttgaaagttgatttcacagacaacatc
aagagtgacctgaaggaaaacggagaagctagcattatggctggcttgccagaagtgatt
tattccagagaatatatgatacaaaccatgacactgttaccagagaggatacgaaacata
gcgttagtgggcaatttacactcaggaaagaccactttcgtggactcattggttctacat
acccattcgccttctattggattaaagaagtcgctcaagaatttcaaacctttacggttt
atggataatcacaagctcgagatagacagaggtactacaatcaaaactagccccatcacc
ttgatgttacaagatttgaaaaatagatcggctatattcaacatactcgatactcctggc
catgcggactttgaagatgaaactattgctgccattgcggctgtagacggaataattctt
gttgtagatgtagttgaaggaatcactgcaagagacagaagtcttgttgaccatgctgtc
aaggagaatgttcccatagttttgatgttgaacaagatcgataggttgattcttgagttg
aaacttcctgtaagagactgctaccagaagctcaactacatagtggaggatgtcaaccaa
cgacttagtcagaacgagtttattgctaactacactcactctacaacggtatctcctgtg
gagaacaacgttatttttgcatcttcaacgtttgaattcactttttcgctaatcagcttt
gctgacctctatctccgtaaatctggaataacaggtgtcgacatagaagaattcagcaag
cggctttggggtgattacttctacgataaaaagactaataagttttcaactaattcacag
gacggtaagctttcgcgatcgtttgtttctttcattctcgaacccatctacaaaatcata
acttacacattggtgtcagagccaggggacaccagattaccttcacttttatgggacaac
tttggtgtgaagctaaacaaacagcagtacaaacaagatcctcagatattattgaaggat
gtgtttaaagccatttttgacgataacaagggattcgtacactccgtcaattctagcata
agcaatcctcggatttcacaaataagaggaatcaactcccagaacttgcctgatgattcc
gtacttgctcgagtagtcaaactagtggaatcttcagacgcttcccaattcttgtcgata
gtcagagtattcaagggagaattgatagtaggatccaagataaaggtcttgggagaaaac
tatgcagaggataatgaagactacaagatacagacagttgaagagctctatttatctggc
gggcgatataaagttcccatagatgttgctggcgaaggtgcaattgtaattgtgggtggt
attgattccattgtcaataagggtgctactatcttagcagctaataaactgttagagaat
tgtgaaatattttcccagcctaactacggcagcaagtcagtgtttaaagtagctgtggaa
ccagcaaatccttctgaattacccaaaatgttagaagggttgagaaaaatcaacaaatcg
tacttggctgcagttatcaatgtagaagaaagtggcgagcatgttattcttgcaccagga
gagctatatttggattgtgtcttacatgatttgcgactctttttcactgacaatttggaa
ataaaagtcagtgaccccatgacaaagttcagcgaaaccgttgtagaaggctcaattaca
aaaataaccaccagcactccttccggaaacaatctgatttcgatcatagctgagcctttg
aatgattcaaaattgagctatgcgattgaatcgggctcaattgacctcagtcagccagct
aaaataacatctaagatattgagaaaagacttcggttgggatgcattggccgcaagatca
gtttggtgttttggtcctgaaggcttacaatcgcctagtctcttactcgatgacacacta
gaagaagagaccgataaaaaattgttatattcagtgaaagattcaatttgccaaggattt
aaatggagtataagcgaggggccactatgtaacgagcctatcagaaatactaagttcaaa
atcttggatgctgttattagcggctcggaaattcatagaagtggaactcagattatacca
atgaccagaaaagcatgttatgcagggtttttaactgcaacatctcgtttgatggaacca
atctactcagtgactgtagtgtgtacgcatagtgccaaagcattagtgtcaaagctctta
gatggtagaagaggtaatatcatcaaagactggccagttccaggtactccgctctttgag
ttggaggggcatgttcccgttatcgagtctgtaggtcttgagacagatatccgaatccgt
gctcaaggtcaagctatgtgttatcttacatttagcaattggcaagttgtgccaggagat
ccactcgatcctgactgtttcttaccatctttgaaaccagtacctgcagagtcacttgct
agagacttcgtaatgaaaacgagaagaagaaaaggtatgacaggcgagccaagcttacaa
aagtacatcgatacaaacttgtatactagattaagagaaaagggaattgttcgttag
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