Scheffersomyces stipitis: PICST_36809
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Entry
PICST_36809 CDS
T01023
Symbol
MTR4
Name
(RefSeq) Dead-box family helicase required for mRNA export from nucleus
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_36809 (MTR4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_36809 (MTR4)
03041 Spliceosome [BR:
pic03041
]
PICST_36809 (MTR4)
03009 Ribosome biogenesis [BR:
pic03009
]
PICST_36809 (MTR4)
03016 Transfer RNA biogenesis [BR:
pic03016
]
PICST_36809 (MTR4)
Enzymes [BR:
pic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PICST_36809 (MTR4)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PICST_36809 (MTR4)
Spliceosome [BR:
pic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PICST_36809 (MTR4)
Complex C
U4/U6.U5 tri-SnRNP related factors
PICST_36809 (MTR4)
Ribosome biogenesis [BR:
pic03009
]
Eukaryotic type
Pre-60S particles
Helicases
PICST_36809 (MTR4)
Transfer RNA biogenesis [BR:
pic03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PICST_36809 (MTR4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Cas_Csc1
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
4840256
NCBI-ProteinID:
XP_001385966
JGI:
36809
UniProt:
A3LY83
LinkDB
All DBs
Position
6:complement(<1394577..>1397783)
Genome browser
AA seq
1068 aa
AA seq
DB search
MDADDLFDVFDEAPVTAPPVIETAGESKKESKKRTAEDVKNESEVKNSSSQYNDENNNEA
SSNNKKANTRSKPDIKPVVFDSLEIEASREVAASDGLMASAESVSDKKPEGLKLRHQVRH
QVAIPPDYPYVPIGEHKRQKEARTYPFILDPFQDTAISCIDRDESVLVSAHTSAGKTVVA
EYAIAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPDAGCLVMTTEI
LRSMLYRGSEIMREVAWVIFDEVHYMRDKSRGVVWEETIILLPDKVHHVFLSATIPNAME
FAEWIVKIHAQPCHVVYTDFRPTPLQHYLFPAAGDGIHLVVDEKGTFREENFQKAMASIS
DAGGDDPASGDKSKGKKGQTYKGGNKDGKSDIYKIVKMIYMKRYNPVIVFSFSKRDCESL
ALKMSKLDFNNDDERDALTKIFNNAINLLPEADKELPQIKNILPLLKRGIGIHHSGLLPI
LKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQMSG
RAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPE
FMLENSFYQFQNAASVPVMEKTLQDLTLKYNTIEVDDEATVKEYYDLKKQLDKYQEDVRK
VITHPGYILPFLQEGRVIKVKIGDQDYGWGMVTSFSKRNNKRNQSFTDYETYIVNVFVYT
MFVDSPVNLIKPLNPMLPEGIRPAKAGEKSRVEYIPITLDSIEKISSVRLRVPEDLKSSA
SKKTLLKTMKDLPKRLPDGIPLMDPVENMKITDQDFQMLLKKIDVLDSKLISNPLYNSAR
LKDLYENYSEKEQIQEKIKNLKEKVLEAQAVIQLDDLRHRKRVLRRLDFVTQNDIIELKG
RVACEISSGDELLLTELIFNGTFNDLTCEQCAALLSCFVFQERAKETPRLKPELAEPLKS
MQDMASKIAKVTKESKIEIIEKDYVESFRPELMEVTYAWCKGASFTQICKMTDVYEGSLI
RTFKRLEELIRQLVQAAKTIGNTDLEEKMEKTIELVHRDIVSAGSLYL
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgacgatctcttcgacgtgttcgacgaagcgcctgtgactgctcctccagtc
attgagacagctggggagtcgaaaaaagagtctaagaaaagaacagctgaagacgtgaag
aatgagagcgaagtgaaaaattccagtagtcaatacaatgatgagaacaacaatgaggcc
agcagtaataataaaaaagctaacacgaggtcaaagccagatattaaacctgttgtcttc
gattctcttgaaattgaggcctcccgtgaagtcgcagcgctggacgggcttatggctagt
gctgagtctgtttcagacaagaagcccgaagggttgaagttgagacatcaggttaggcac
caggttgccattccgcctgattatccgtatgtgcccatcggtgagcacaagagacaaaaa
gaggcgagaacttatccatttattttagatcctttccaggacacagccatctcgtgtata
gacagagatgagtctgtacttgtttctgcgcacacctcagctggtaagacagttgtagcc
gagtatgctattgcacagtcgttgcgtgacaagcagcgtgtcatttatacttcgcccatt
aaggctttaagtaaccagaagtatagagagttattggcagaatttggcgacgtaggcttg
atgaccggagatgtcactatcaaccccgatgctgggtgtttggtgatgacgacggagatt
ttgaggagtatgttgtaccgtggttcggaaatcatgcgagaagtagcttgggtcatcttt
gatgaagtccactatatgagagacaagtcgcgtggtgtcgtctgggaagaaactattatc
ttgttaccagacaaggtgcatcatgtttttctttctgctaccattcccaatgccatggaa
ttcgcagaatggattgttaagatccatgcgcagccttgtcacgttgtgtacacagacttc
aggccaactccattgcagcactacttgtttccagctgctggagatgggatccatttggtt
gtagacgaaaagggaactttcagggaagaaaatttccagaaagccatggcttctatcagc
gatgctggtggcgatgatcctgcctcgggtgataaatctaaaggtaagaagggtcaaacg
tacaagggaggcaataaggacggtaagtcggacatctacaagatcgtcaagatgatctac
atgaaaaggtacaaccctgtgattgtgttttcgttttcgaaaagagactgtgagtctctt
gcattgaagatgtccaagttagatttcaacaacgacgacgaaagagatgccttgaccaag
atcttcaataacgccatcaacttgttgccggaagcagacaaagagttgccccagatcaag
aacatcttacccttgttgaagcgaggtatcggtatccaccactcgggattgttgcctata
ttgaaggagattatcgagatcttgtttcaggagggtcttttgaaggtgttgtttgctaca
gagaccttttcaattgggttgaatatgcctgctaaaacagtagtatttacctctgttcgt
aaatgggatggtgtaggcttcagatgggtctcgggaggtgagtatatccagatgtctggt
agagctggtcgtcgtgggttggatgatcgtggtatagtcatcatgatgattgacgaaaaa
atggagcctcaagtagccaaaggtatggtaaagggacaggctgatagacttgactcggcc
ttccatttgggctacaacatgatcttgaatttaatgagagtcgaaggcatttctcccgag
ttcatgttggaaaactcattctaccagttccagaacgctgcctctgtccctgtgatggaa
aagacgttgcaggacttgactttgaagtacaacactatcgaagtcgatgatgaagctaca
gtgaaagagtactacgatctcaagaagcagttggacaaataccaggaagacgtcagaaaa
gtaattactcatcctggctacatcttgcctttcttgcaagaaggaagagttatcaaagtc
aaaataggtgatcaggactacggctggggaatggtgacttctttctccaaacgtaacaat
aagagaaaccagtcgttcacagactacgaaacctacattgtcaatgtatttgtgtacacg
atgtttgtggattcgcccgttaacttgatcaagcccttgaatcccatgttacctgaaggg
attagacctgctaaggccggtgagaagtccagagtggagtacattcctatcactctcgat
tcaattgaaaagatcagtagtgtgcggttgagagtaccagaagacttgaagagttcagca
tctaagaagacgttgttgaagacgatgaaggatttgcccaagagattgcccgatggaatt
ccattgatggatcctgtggaaaacatgaagatcactgaccaggacttccagatgctcttg
aagaagatcgatgttttagactccaagctcatcagcaaccccttgtacaactcagcaaga
ttgaaggatttgtacgaaaactacagcgaaaaggaacaaatacaggaaaaaatcaaaaac
ttgaaggagaaggttttggaagcacaagcagttatccaattggatgacttgagacacaga
aagagagtgttgagaaggttggactttgttacacagaacgatatcatcgagttgaagggt
agagttgcctgtgaaatcagttcaggtgatgagttgcttttgacggaattgattttcaac
ggtaccttcaacgacttgacatgtgaacagtgtgctgcattgctttcgtgttttgttttc
caagaaagagccaaggagactccacgtttgaagccagaattggctgagccattgaagtct
atgcaagacatggccagcaagatagctaaggtgacgaaggaaagcaagattgaaataata
gaaaaggactacgtcgagtcgttcaggccagagttgatggaagttacatatgcttggtgt
aaaggtgcatcgttcactcagatctgtaagatgaccgatgtgtacgaagggtcgttgatc
agaactttcaagcgtttggaagaattgatcagacagttggtgcaagcagccaagaccatt
ggaaataccgacttggaggagaagatggagaagaccatcgagttggtgcacagggacatt
gtctctgctggatctttgtatctttag
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