Scheffersomyces stipitis: PICST_37533
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Entry
PICST_37533 CDS
T01023
Name
(RefSeq) predicted protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pic
Scheffersomyces stipitis
Pathway
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_37533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pic03041
]
PICST_37533
Spliceosome [BR:
pic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
PICST_37533
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_EML
PRP4
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_Vps41
eIF2A
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
WD_LRWD1
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
4851543
NCBI-ProteinID:
XP_001388029
JGI:
37533
UniProt:
A3GGZ4
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Position
1:complement(2092075..2093532)
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AA seq
485 aa
AA seq
DB search
MGGKGVTVLNDPRNRVSSSFDAKTVPTSDPEVRAELRKLGEPVTYFGEDDSDRRQRLIKL
LSEKKHTNFDFDYEMEEDELLENEESDENEDDEDFYTPGEQELYTAREEILHSSLERARK
RIEKQQKKTKDQSFIKYLKHRRHINSQLAKYELFGTQLIQGNTRALSAVRFSKDSELIAT
GSWDGGIYILDSGDLSTKFKSASGYHSEKVSAIDWDVYTDSNLLVSGGNEGNINFWKVNK
ESETKVIKPVVSIKAAHDNRITKTLFHPSGRFVTSTSCDQTWKLWDVNRPENALLQQEGH
SKEVFAGSFHPDGSLFASGGFDAIGRIWDMRSGRSIVTLERHIKGIYSMDWSPNGYHLAT
ASGDCSVKIWDLRKLQRDFKEIFSIPVHTKLVSDVRFFNRRSVSNVLSTEVANENGDNPE
VLDSDGSFLVTSSFDGLVNIWSADNFIKVKTLRGHNDKVMSCDISCDGSTIVSSGWDRTV
KLWKS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggggggtaaaggagttaccgtattaaatgatccacgaaatcgtgtatcttctagtttt
gatgcgaaaactgtccctacatccgatccagaggtccgcgcagagctcagaaagcttgga
gagcctgtaacttattttggagaagatgattctgatcgtagacagagacttataaagctt
ctctccgagaagaaacatactaattttgactttgactatgaaatggaagaagatgaattg
ttagaaaacgaagaaagcgatgaaaacgaggatgacgaagacttttatacacctggagaa
caggaattgtacacagccagagaagaaatactccattcttcgttggaaagggcaaggaag
agaatagagaaacaacaaaagaaaacaaaagaccagagctttatcaagtatctcaaacat
aggcgacacattaattcacaactagccaaatacgagctttttggcactcagcttatacaa
ggtaatactagagctctatcagccgtgagattctcaaaagatagtgaattgatagcgaca
ggttcgtgggatggaggaatctacattttagattctggagatttatcaactaagtttaag
ctggcatctgggtatcattcagagaaagtaagtgctatagactgggatgtctatacagac
agcaatcttcttgtctcaggaggtaatgaaggaaacataaacttctggaaagttaataag
gagtcagagacgaaagtaataaagcccgtcgtatctataaaggcagcccatgataatcgt
attactaagacgttgtttcatcctagtggtagattcgtaacctcgacatcatgtgaccag
acatggaagctttgggatgtcaatcgtcccgaaaatgcactattgcaacaagagggtcat
tctaaagaagtttttgctgggtcttttcatcctgacggcagtttatttgcctctggaggt
tttgatgctattggaagaatatgggatatgcggtcaggaagatcaatagttacacttgaa
agacatataaaaggtatttacagtatggactggtcgccaaacgggtaccatttggctaca
gctagtggagactgctcggtgaagatttgggatcttcgaaaactccaacgagacttcaag
gagatattttcaattccagtgcatacgaagctcgtaagtgacgtgcggttttttaacagg
agatctgtgtctaatgtactttcgaccgaagttgcaaatgagaatggagacaatcctgaa
gttctcgactccgatggctcttttctcgttacctcttcttttgatggacttgtaaatatc
tggtcagctgacaatttcatcaaggttaagacccttagaggacacaacgacaaagtgatg
agttgtgatattagttgcgatggaagtacaatagtatcgtcgggatgggacagaaccgtc
aagttgtggaagagctag
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