KEGG   Scheffersomyces stipitis: PICST_37533
Entry
PICST_37533       CDS       T01023                                 
Name
(RefSeq) predicted protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pic  Scheffersomyces stipitis
Pathway
pic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PICST_37533
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pic03041]
    PICST_37533
Spliceosome [BR:pic03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    PICST_37533
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_EML PRP4 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 NBCH_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_Vps41 eIF2A Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_WDR75_2nd WD_LRWD1 KNTC1_N
Other DBs
NCBI-GeneID: 4851543
NCBI-ProteinID: XP_001388029
JGI: 37533
UniProt: A3GGZ4
LinkDB
Position
1:complement(2092075..2093532)
AA seq 485 aa
MGGKGVTVLNDPRNRVSSSFDAKTVPTSDPEVRAELRKLGEPVTYFGEDDSDRRQRLIKL
LSEKKHTNFDFDYEMEEDELLENEESDENEDDEDFYTPGEQELYTAREEILHSSLERARK
RIEKQQKKTKDQSFIKYLKHRRHINSQLAKYELFGTQLIQGNTRALSAVRFSKDSELIAT
GSWDGGIYILDSGDLSTKFKSASGYHSEKVSAIDWDVYTDSNLLVSGGNEGNINFWKVNK
ESETKVIKPVVSIKAAHDNRITKTLFHPSGRFVTSTSCDQTWKLWDVNRPENALLQQEGH
SKEVFAGSFHPDGSLFASGGFDAIGRIWDMRSGRSIVTLERHIKGIYSMDWSPNGYHLAT
ASGDCSVKIWDLRKLQRDFKEIFSIPVHTKLVSDVRFFNRRSVSNVLSTEVANENGDNPE
VLDSDGSFLVTSSFDGLVNIWSADNFIKVKTLRGHNDKVMSCDISCDGSTIVSSGWDRTV
KLWKS
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggggggtaaaggagttaccgtattaaatgatccacgaaatcgtgtatcttctagtttt
gatgcgaaaactgtccctacatccgatccagaggtccgcgcagagctcagaaagcttgga
gagcctgtaacttattttggagaagatgattctgatcgtagacagagacttataaagctt
ctctccgagaagaaacatactaattttgactttgactatgaaatggaagaagatgaattg
ttagaaaacgaagaaagcgatgaaaacgaggatgacgaagacttttatacacctggagaa
caggaattgtacacagccagagaagaaatactccattcttcgttggaaagggcaaggaag
agaatagagaaacaacaaaagaaaacaaaagaccagagctttatcaagtatctcaaacat
aggcgacacattaattcacaactagccaaatacgagctttttggcactcagcttatacaa
ggtaatactagagctctatcagccgtgagattctcaaaagatagtgaattgatagcgaca
ggttcgtgggatggaggaatctacattttagattctggagatttatcaactaagtttaag
ctggcatctgggtatcattcagagaaagtaagtgctatagactgggatgtctatacagac
agcaatcttcttgtctcaggaggtaatgaaggaaacataaacttctggaaagttaataag
gagtcagagacgaaagtaataaagcccgtcgtatctataaaggcagcccatgataatcgt
attactaagacgttgtttcatcctagtggtagattcgtaacctcgacatcatgtgaccag
acatggaagctttgggatgtcaatcgtcccgaaaatgcactattgcaacaagagggtcat
tctaaagaagtttttgctgggtcttttcatcctgacggcagtttatttgcctctggaggt
tttgatgctattggaagaatatgggatatgcggtcaggaagatcaatagttacacttgaa
agacatataaaaggtatttacagtatggactggtcgccaaacgggtaccatttggctaca
gctagtggagactgctcggtgaagatttgggatcttcgaaaactccaacgagacttcaag
gagatattttcaattccagtgcatacgaagctcgtaagtgacgtgcggttttttaacagg
agatctgtgtctaatgtactttcgaccgaagttgcaaatgagaatggagacaatcctgaa
gttctcgactccgatggctcttttctcgttacctcttcttttgatggacttgtaaatatc
tggtcagctgacaatttcatcaaggttaagacccttagaggacacaacgacaaagtgatg
agttgtgatattagttgcgatggaagtacaatagtatcgtcgggatgggacagaaccgtc
aagttgtggaagagctag

DBGET integrated database retrieval system