Scheffersomyces stipitis: PICST_43936
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Entry
PICST_43936 CDS
T01023
Symbol
SKI3
Name
(RefSeq) antiviral protein
KO
K12600
superkiller protein 3
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_43936 (SKI3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_43936 (SKI3)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
PICST_43936 (SKI3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_22
TPR_2
TPR_17
TPR_14
TPR_19
TPR_1
TPR_CcmH_CycH
TPR_11
TPR_16
TPR_8
ANAPC3
TPR_7
ARM_TT21_C
T7SS_EccA1_N
PFam54_60
TPR_Slam
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
4838318
NCBI-ProteinID:
XP_001383322
JGI:
43936
UniProt:
A3LQY0
LinkDB
All DBs
Position
3:182981..187222
Genome browser
AA seq
1413 aa
AA seq
DB search
MSSVKKALKLAKSAIDSGDAELAHEHIQDALRTDPESYFAYVFLGKAYQLENDIANANKA
FERATQLEPENMLAWRGYLQSVKSESDYALFFKVVTQLIRLQVDQGFSIAETIKDIRNYL
AVQKYKKNPVLHEMYLRQLKPGAELAELVGSALGNPVDNLRDLIKLTAKKLEVEVTHKSA
KERVKYGRRLTANQQLKMDNFQWAIYKNTDLESLYEMYLNIGTNDDQRRIFEDDLLNFRY
QLLKVCPEKKELLHKIQEMVDGMALVRTSSRVCWNLYFEWLDIQNIADLHERNVIYYLNH
FPGDGLGIVLYAYALSDISPFNKNVIINSVKSHDSFTSTKEQKTSKRKKRYEAATEVESN
TKPGKDRDPYDISQFYLSSEEVISFMLKGYDCSKQSVLAIRIIIEFYIRSRNFPEATKKC
KEGIRLLADLQRSFGINLKNSREHILSSLADIYTQQDTPKNFNKALELYNKILDFSPDSV
NARVGKGLILIENGKYAESKMLLEGVVQKHQDNVVAQVEYYWCSILLNDHESGRKGLYSA
LEKINGVDNLSKERRSVIRWRIAQSYYVEDSSNAHNLSNAYSVLIEALKDSRSYAPIYTL
LGILFKDYYSDSARAQRCFYKAFELDYGETTAAKYIVEELSSKDEWGLAQTICERIVNSE
DAMESISKSAKDNKDRSWPYRVLGYCGLNRQSDYGTVEWLQNALRIDSTDYECWTALGEA
YLNCGRLEAAVKVLQFSLSLNEGAWETKYLLGIAHCSIFEFDEGIKHLVEALEYNPGQEC
ILNAIYESYLENTHYLLFNGFSRRAISSNFETIKYLQLSVMQNKDSQSLWKALAECFQFY
LTVREKIGSFPIDFMESLFGTVNFDTPTNDVLAKLEDKESSNLSYNVSLFNSGKREEAIC
NFMIMSSKAAVQFLTNKPNRSVSAAAYYNLGLSYSEAFQLTDIAAYRDNAIIVLKKAIQL
EDTNASFWTALGSVYVTSNVRISQHCFIMACEIDGRDVIVWTNLAALYLYVGDYELANEC
FLRAQAAEPLETNPLLGQALAADAMGDESLAAKIFSHAFSTSRGRSPLALVLYGLSVLQR
RIDDIDPTDYAASLEFSLANEALLTYLKYAPDDVFALEAAATIAERCKSYDVAVTVGERL
CTILEAKYEETEDEQTLVKYASSKSQLARLYLGMLEYQKALDCAENAIELIGDSTEDAEL
SKIELSSRIVLGLSWFFNDEFELALKELRSILSDHGNTRSIAILVAQILYAYGSEETKSA
ALDQLFSYIEENGSSLAVVLTLGAMCVGDNIEEYLLPVKEELVGISLEDVIRDTHRDIPR
LISEINKRIDGVSGNNDYLWQRNAVLFPSEYEVWKKLNSTMAVSVAALEKSKVSASQASE
AHLLGGSLRELQRSMILAPNSAIASQAFQKMFA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgtcaagaaggcactcaagttggctaaaagcgcaatcgatctgggtgatgcg
gaattggcccacgagcacattcaggatgcgctcagaactgatcctgagtcctactttgcc
tatgtatttctcggaaaggcataccagttagaaaatgatatagccaatgccaataaagct
ttcgaaagagcgactcagttggagccagagaatatgttggcttggaggggatatttgcag
agcgttaaaagcgagtctgattatgcgctttttttcaaggttgtcactcaattgatacga
ttacaagtagatcaaggtttttctatagcagaaaccataaaggatatccgaaactacttg
gctgtgcaaaagtacaagaagaacccagttctccatgaaatgtatctccggcaattaaaa
ccgggagctgagctagccgaacttgttggttcagctcttggaaatcctgttgataatctt
cgagacttgatcaagttgacagccaagaagttggaagttgaggtaacgcacaaatcggca
aaagaaagagtgaagtatggtaggagattgacagcaaaccagcagctcaagatggacaac
ttccaatgggccatctataagaatacagacttagagtcgttgtacgaaatgtatctcaat
ataggcacaaatgacgaccagagaagaatctttgaggatgatttgttgaatttcaggtac
caacttctcaaagtttgccctgagaagaaagaattgttgcacaagatccaggagatggta
gatggcatggcgttggtgaggacgtcgagtcgtgtttgctggaacttatattttgaatgg
ctcgatatccaaaacatagctgatcttcatgaaagaaatgtcatatattacttaaatcac
ttccctggtgatggattagggatcgtactctatgcctacgcattaagtgacatatcgcct
ttcaacaagaatgtaatcatcaatagtgtcaaaagtcacgattcattcacctcgaccaaa
gagcagaagactagtaaacgtaaaaagagatacgaagccgcgacagaagtggaatcaaat
acaaaaccaggcaaagatagagatccttatgacattagtcaattctacctatcttcagag
gaagtgatatctttcatgttaaaaggctatgactgttccaaacagtcagtgttggccatc
agaatcattattgaattttatattcgttcccgaaactttccagaagcaactaagaagtgc
aaagagggtattcgtcttcttgctgatttacagagaagctttggtatcaatttgaagaat
tccagagaacatatcttgtcctctttagctgacatatacacccagcaagatactccaaag
aacttcaacaaagcccttgaattgtacaacaaaatcttggattttagtcctgatagcgtt
aatgccagagttggcaagggtttgattttgattgagaacggcaaatacgctgaatcaaag
atgttgttagaaggcgtagttcagaaacaccaagacaatgtcgtggctcaggtcgaatac
tattggtgtctgatcttgctaaatgaccacgaatctggaagaaaaggcttgtattctgcg
ttggaaaagatcaatggagtagataatctaagtaaagaaaggaggtctgttatccgatgg
agaatagctcaaagttactacgttgaagacagcctgaacgctcataatctttcaaatgct
tattctgtcttgatagaggctcttaaggactctcgatcatatgccccaatatacactttg
ttgggaatcttgtttaaggactactattccgattctgctcgtgcccaaagatgtttttac
aaagcatttgagttggactacggggaaactacggctgccaagtatatcgtagaagaatta
tcttctaaggatgagtggggtctagctcaaaccatctgtgaaagaatcgttaactctgag
gatgccatggaactgattctgaaatctgctaaagataacaaggatagatcctggccatat
agagtattaggttactgtggtcttaataggcaaagcgattatggcaccgttgaatggtta
cagaatgcattgcggattgattcgacggactacgaatgttggactgctttgggcgaagcg
taccttaactgtggacgacttgaagctgctgtcaaagtcttgcagttttcgttgtctctc
aatgaaggggcctgggaaaccaagtacttgttgggtattgctcattgttcaatctttgaa
tttgatgaaggaatcaagcacttagtagaagctttggaatataaccctggtcaagaatgt
atcttgaatgctatctatgaatcttatttggaaaatacccattacttattgtttaatggc
tttctgagaagagcgattctgtccaattttgaaactatcaaatatcttcaattgctggta
atgcaaaataaagattcgcaaagcttatggaaagcattggcagaatgctttcaattctac
ttgacggtaagagaaaagataggttcattcccaatagacttcatggagtccttatttgga
acagtcaattttgataccccaactaatgatgttcttgccaagcttgaagataaggaatcc
tctaacttatcctacaacgtctccttgttcaattctggaaaacgggaggaggcaatttgt
aactttatgatcatgagctccaaagcagcagttcaattcttgaccaataagccgaatcgt
tctgtcagtgcggctgcttactacaaccttggattatcatactctgaagctttccaattg
acggatatcgctgcttatagagacaacgcaattattgttctcaagaaagcaattcaattg
gaagatacgaacgcttctttctggacagctttgggtagtgtgtatgttacatccaatgtc
agaatctcccaacattgttttatcatggcctgtgaaattgatggaagggatgttattgtt
tggaccaacttggctgctttgtacttgtatgtgggcgattatgaattggcaaatgaatgt
ttcttgagagcgcaggcagcagaaccactagaaacaaatccattgttgggtcaagctttg
gcagctgatgctatgggtgacgagagcttggctgccaaaatcttcagccatgctttctct
acctctagaggaaggtcaccgttggctttggttttgtatggtttgtctgttttgcaaagg
agaattgacgatatagatcccaccgattatgctgcctcactagagtttagtcttgccaac
gaagcactattgacttacttgaagtatgctccagatgacgtgtttgctttagaagctgca
gctaccatcgctgaaagatgtaaaagttacgatgttgctgttacggttggtgaacgctta
tgtacaatccttgaagctaagtacgaggaaactgaagatgaacagacattggtcaaatac
gcttcttccaagtcccagttggccagactctatctaggaatgcttgaataccagaaagca
cttgattgtgctgaaaatgctatcgagttgattggagatctgactgaggacgctgaattg
agcaagattgaattatcatcgagaattgttcttggattgagttggttctttaatgatgaa
ttcgagctagctcttaaagagcttaggtctatactttccgaccacggtaacaccagaagc
attgctatacttgtagcacaaatactctacgcctacggcagtgaagagacaaagctggca
gcattggaccagctcttttcgtatattgaagagaatggttcttcgcttgcagtagtattg
acgttgggagccatgtgcgtgggcgacaatatcgaggagtaccttttaccagtcaaggag
gaattggttggtattctgttggaagatgttatccgcgatacacatagagacattcctcga
ttgatcagcgaaatcaacaagcgaatcgacggtgtttcaggcaacaacgactatctttgg
cagaggaatgccgttttgttcccatctgaatacgaagtgtggaagaaactcaatagtact
atggctgtcagtgtggctgcgttagaaaagtccaaggtcagtgcttcccaggctagtgaa
gcacatcttttgggtggctctttgcgtgaacttcagagaagtatgatcctagctccaaat
ctggctattgcttctcaagctttccagaagatgtttgcctag
DBGET
integrated database retrieval system
