Scheffersomyces stipitis: PICST_45999
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Entry
PICST_45999 CDS
T01023
Name
(RefSeq) predicted protein
KO
K06100
symplekin
Organism
pic
Scheffersomyces stipitis
Pathway
pic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PICST_45999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_45999
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_45999
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PICST_45999
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
PICST_45999
U7-dependent histone pre-mRNA processing factors
PICST_45999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
DUF5097
Motif
Other DBs
NCBI-GeneID:
4839204
NCBI-ProteinID:
XP_001385321
JGI:
45999
UniProt:
A3LWJ9
LinkDB
All DBs
Position
5:complement(1659596..1661767)
Genome browser
AA seq
711 aa
AA seq
DB search
MSTVAKEFKPEQIIEQLDQARTLAFSMPDTYPQVLRQILNFVHNPDKSIQKWCVKFLHES
FVKNDKLKQHDKIDLALDTLDSLIFLSNVKDIDTFESVIDISSVIYKLVFQYVAENVGCN
QVWSKLTELKNSLVNKFQSNYPLEPSDNAEHDMLRNIHTKVELLKFIIIVIDYQSQTNVV
NANGDSTPPPDTFSLNKVSSTHALIKYSNMEYESKSLLDLVLKVFSYDILIPPLLSAILN
HCVIIMKRKPQYANKILNIIENYDTNTKFQSNYQSVESFKLSKKYVDRALKIFIQHVLRH
NLVPSNYQNSLNKKLTMLIDRGNDIRKKNIFNIEEPNIKKRKFEGFLNSAKKIKTIDYKN
LYCLNDVDNELNNFDLTTVPQNILVSMVINALGKASVTKLSKALEIIGERYTDAVESNVV
AAPTVKKEIKQERQGFDDEDDEDGPTGYDPDSVYTLPPPTELSFQEKKDHISIIIKNFFN
LAKNANIVSVEDKDDSKTQNGEINVSKELTKIAIKSWKKDSWIILLTRLATRGMRSADEG
KSPDDRANSEISDMIRNAIFDYFLDNIHGRIDLIIEWLNEEWYSEKVFNEEIAIKKTVSS
DGLHIQIETPIYNKWAGKVLDAMIPFLEPNDRKIFIRLMSDLPYLNEDLVGRIKSLCLDP
VRSKIGFLSLQFLIMYRPPVKQACINILQELSNSDQEDLKEEASKLHAKYK
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacagtggctaaggaattcaagccagagcagataatcgagcagttggaccaggcc
cggacgttggctttttcaatgcctgacacctatcctcaggtgttgcgccaaatcttgaac
tttgtgcataaccctgataaatcaattcagaagtggtgtgtcaagtttctccatgaatct
tttgtcaaaaacgacaaactcaaacaacatgacaaaatagatcttgctttagatacccta
gattcattgattttcttgtcgaatgtcaaagacattgacacctttgaatctgtgatagac
atttccagtgtgatatacaagcttgtgtttcagtatgtagcagaaaatgtcggctgcaac
caagtatggagtaaacttactgagttaaagaattcgttggtcaacaagttccagtccaat
tatcccttggagccatcagataatgccgaacacgatatgttaagaaatatacacacgaag
gtagaattactcaagttcatcattattgtcatagattaccagctgcagaccaacgttgtc
aatgctaacggtgattccactccacctccagatacattttcgctcaacaaagtgagctcc
acccatgcattgataaagtacagtaatatggagtacgaatctaagagcttacttgactta
gtcttgaaagtattctcctacgatatcttgattcctcctttactatcggccattttaaac
cactgcgttattatcatgaaaagaaaacctcaatacgcaaataagatcttaaacattatt
gaaaactacgacacgaacacaaaattccaatccaactaccaatctgtagaactgttcaag
ttgtcaaaaaagtacgtggaccgtgccctaaaaatcttcattcagcatgtacttagacat
aacttggttccatcaaattaccagaattctttgaataaaaaactaaccatgttgatagat
cgtggtaatgacatcagaaagaagaacattttcaatattgaagagccaaatattaagaag
agaaagtttgaaggattcttgaattcagcaaagaaaatcaaaaccattgactacaagaat
ttgtattgcttaaacgatgtcgacaacgaattgaataatttcgatttgaccacggtacct
cagaatatattggttagcatggtgatcaatgctttgggcaaagcatcagtaaccaagtta
tccaaggcattggaaattatcggtgaacgttatactgatgcagtggaaagcaatgtagtt
gctgcaccaacagtaaagaaagaaattaaacaggaacgtcaaggttttgatgacgaggat
gatgaggatggacctacaggttatgatccagattcggtctacactttacccccaccaaca
gaactttctttccaggagaagaaagatcatatcagcattatcataaagaattttttcaac
ttggctaaaaatgcaaatatagtcagtgtggaagacaaagatgacagcaagactcaaaac
ggcgaaatcaatgtaagcaaagagttgacaaaaattgcaatcaagtcatggaagaaggat
agttggattattcttttgactaggttagcaactagaggcatgagaagtgctgacgaaggt
aagtctccagatgatagagccaacagtgaaataagtgacatgattaggaacgctattttt
gactacttcttggataacatccacggccgtatagacttgatcattgagtggttaaacgaa
gaatggtacagcgagaaggtattcaacgaagagattgcaatcaaaaagactgtgagctca
gacggtctacatatccagattgagactcctatttacaacaaatgggccggtaaggttctt
gatgccatgatcccttttttggaaccaaatgaccgtaaaatcttcattcgtttaatgagt
gacttgccttacttgaacgaagatttggttggaagaataaagtctttgtgcttagatcct
gtacggtctaaaattggtttcctttccttgcagtttcttataatgtatcgccctccggtg
aaacaagcatgcatcaatattctacaagagctcagcaatagcgaccaagaagatttgaaa
gaggaagcatccaaattgcacgccaaatacaaatag
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