Scheffersomyces stipitis: PICST_49623
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Entry
PICST_49623 CDS
T01023
Symbol
TFB1
Name
(RefSeq) RNA polymerase II transcription factor B 73 kDa subunit
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pic
Scheffersomyces stipitis
Pathway
pic03022
Basal transcription factors
pic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PICST_49623 (TFB1)
09124 Replication and repair
03420 Nucleotide excision repair
PICST_49623 (TFB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_49623 (TFB1)
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_49623 (TFB1)
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PICST_49623 (TFB1)
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PICST_49623 (TFB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
Motif
Other DBs
NCBI-GeneID:
4840596
NCBI-ProteinID:
XP_001386234
JGI:
49623
UniProt:
A3LYN7
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Position
7:complement(99878..101731)
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AA seq
617 aa
AA seq
DB search
MRLRLLYKNDGEDEKSLLLNFSNRPTMNNIKDALQTIVARSRTVIKDTPTPATTVSDGNE
TTPGAITPTSTPTPSSVGASSSASTNGAGSLSFNTPESLSDASLLRNFQLQQQYLKEDRN
LRSIFTSSVIDNKLTPQLFWSTRLNQLRTYALTISQHRGPYNVLSTIKPVATSDNQVNVN
VTRDTINEIFDTYPIIRRAFTELVPSKFSEGEFWSRFFNSKLFRRLRGDKINNSTNRGDV
ILDKYLYIDQTQKANEDKESATTSLDQTSKEPQSEQTSTAPSLQNPQIKVNKFLDLLGNE
EDNSQKLGNRPDLTMRFEDDGIKKVNLGQENEMIVLMKNMNKLSSKMVEMSNAISTTQQS
LTQPDEPDSLSQAEINEYQEELNLHDLNEVEESEFIRLSINSNLDAKSSLRRGSEAQMNH
FTPDELSSFFSSNKFKPLVNLSDTYDSKNADIEKSSNEVTSLIKHNFRTFKLTTKDSHGV
SYDDVKNLVDESLVQEIIRYNMTVVEFLSHFWKLFLNGNNPTQLKRLFASLKNCRNDLTA
LKERATKKFDEMELVKNNEKLREKIIRSLQSCLEPMEVSLDMACNEYVAAVRLAQKQQPQ
ETESVEINDNGKRPLQQ
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgagactccgtctcttgtacaaaaacgacggcgaggacgaaaagtcgcttctcctcaac
ttcagcaacaggccgactatgaacaatatcaaagatgctctccagacaattgtagccaga
ctgagaactgtgatcaaagacactccaactcctgcaacgacagtttctgatggaaatgaa
actactcccggtgctataactccaactctgacacccacgccatcttcagtcggtgcttca
tcgtctgctctgaccaatggagccggtagtctatctttcaacacacccgaatctctttct
gatgcgagcttgctcagaaactttcaattacaacagcagtatttgaaggaagaccgtaat
ctccgtagcatattcacactgtcggtaatagacaacaagctaacgccgcagttgttctgg
tccacaagattgaatcagttgcggacatatgctttaacgatctcacagcatagaggaccg
tataatgttctctctactataaagcctgtagccacatcagacaaccaggtcaacgtgaat
gtaacaagagacacaattaacgagatctttgacacgtacccaatcatcaggcgggctttc
accgagttggtgccgtctaagttcctggagggagagttttggtcgcgtttcttcaactcc
aaactattccgaagattgagaggagacaaaatcaacaacagcactaacagaggtgatgtg
atcttggacaaatacttatatatagaccaaacacaaaaggccaacgaggacaaagagctg
gctacgacgtcattggaccagacatcaaaagaaccccaatctgaacaaacatcaactgct
ccttctcttcagaaccctcaaataaaggtcaataagtttctcgatttattgggaaatgaa
gaagacaattcacagaagttaggaaaccgtccagacttgacgatgcgattcgaagacgat
ggtatcaagaaagtaaaccttggccaagaaaacgagatgatagtgttgatgaaaaacatg
aacaaattgtcgtcgaagatggtggagatgagcaatgccattctgacgacccagcagctg
ttgacgcagccagatgaaccagattctttatctcaggcagaaataaacgaataccaggaa
gagttgaatttgcacgatttgaacgaagttgaggagtctgagttcatacgcttatccatc
aacagtaatcttgacgccaagtcatcgttacggaggggatctgaagctcagatgaatcat
ttcactcctgacgagctttcaagtttcttttctctgaacaagttcaagcctcttgtgaat
ctcagcgatacttatgattctaagaatgctgatatagagaagtcgagtaatgaagttact
tcgttgataaaacataacttcagaacatttaaactcacaaccaaagactcacatggtgtg
agttatgacgacgtcaagaacttggtggatgaatcgttggttcaagaaattatcaggtat
aacatgactgtcgttgagttcttgtcacatttctggaagttgtttttgaacggcaacaat
cccacgcaattgaagagattgtttgccagtctcaagaattgtcgcaatgaccttacagca
cttaaagaacgagcaactaagaagtttgatgagatggaattagtcaagaataacgagaaa
ttacgtgaaaagatcattagaagcttacagagttgtcttgaacctatggaagtcagtttg
gacatggcttgtaatgagtatgttgcggctgtgaggctagctcaaaaacaacagcctcaa
gaaacagaatctgtagagatcaacgataatggaaaaagaccactacagcaatag
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