Scheffersomyces stipitis: PICST_49633
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Entry
PICST_49633 CDS
T01023
Symbol
TFB3
Name
(RefSeq) RNA polymerase II transcription factor B subunit 3 (RNA polymerase II transcription factor B p38 subunit) (RNA polymerase II transcription factor B 38 kDa subunit)
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
pic
Scheffersomyces stipitis
Pathway
pic03022
Basal transcription factors
pic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PICST_49633 (TFB3)
09124 Replication and repair
03420 Nucleotide excision repair
PICST_49633 (TFB3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_49633 (TFB3)
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_49633 (TFB3)
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PICST_49633 (TFB3)
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PICST_49633 (TFB3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
TRAF3_RING
zf-C3HC4_3
zf-RING_16
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
4840611
NCBI-ProteinID:
XP_001386138
JGI:
49633
UniProt:
A3LZ78
LinkDB
All DBs
Position
7:660145..661194
Genome browser
AA seq
349 aa
AA seq
DB search
MPSKFQSLTISLDDRSKDMCPICKTDKYLSPNMNFLINPECYHKICESCVDRIFSLGPAP
CPYASCGKILRKNRFKKQIFDDLRIEREIDIRKRVGSVYNKTEEDFDDLREFNKYLETIE
NIIFNLNYGIDAEETEADLVKYEQEHKLEILEKNMRQSQKNADLAAYQEAMERLKQEKLR
IQKQMEVEDMEYQKQSQQDLLDKLTTGSASSTDEIIKQQQQNALKRSSLRRRELQQITNQ
LDQQFNKSNPLYKHAKELEENLKTPFTPFKGDRDLNKNYHLLPIPNDIDELMDIENHISD
SYFDPYVNQLAKNKEYLGAGWRLQHVFEKALDEAFIGLGCFIEKEKATA
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgccatccaagtttcagtcactaaccatatctctagatgaccggtccaaggacatgtgt
cccatctgtaaaacagacaagtacttgtctccgaatatgaactttctcattaatccagaa
tgctaccacaaaatttgcgagtcttgtgtggaccgtatattttcattaggtccagctcca
tgcccgtatgcgagttgtgggaagatcttgagaaagaaccggttcaagaaacagatcttt
gatgatttacgaatcgagcgagaaatcgatatcagaaagagagtaggaagtgtctacaat
aagacagaggaggactttgatgatcttagggaattcaacaaatacttagagacgatagag
aatataatattcaatttgaattacggaatcgatgctgaagagaccgaggctgatttagtc
aaatacgaacaagaacataaattagagatattagaaaagaatatgcgtcaaagtcagaag
aacgcggatttggctgcttatcaggaagccatggaaagactcaagcaggaaaagttacga
attcagaaacaaatggaagtagaagacatggagtaccagaaacagctgcaacaagattta
ttagacaagttgacaactggctctgcttccagcactgacgagattatcaaacaacaacag
caaaatgcattaaaacgttcttccttgagaagaagagaattgcaacagataaccaaccaa
ttagatcaacaattcaataagtcaaacccgttgtacaagcatgctaaggaattggaagaa
aacttaaaaacaccatttacaccatttaagggtgatagagacctaaacaagaactaccac
ttattgcctataccgaacgacatcgacgagctcatggatatcgaaaaccacatctctgac
agctacttcgatccatatgtaaaccagctagccaagaacaaagagtacttgggagccggc
tggagattgcagcatgtatttgagaaagcattggatgaagcattcattggattgggttgt
ttcatcgagaaggaaaaggcaacagcctag
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