Scheffersomyces stipitis: PICST_50259
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Entry
PICST_50259 CDS
T01023
Symbol
LSM2
Name
(RefSeq) snRNA-associated protein, Sm class
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_50259 (LSM2)
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_50259 (LSM2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_50259 (LSM2)
03041 Spliceosome [BR:
pic03041
]
PICST_50259 (LSM2)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PICST_50259 (LSM2)
mRNA degradation factors
5'-3' decay
Lsm complex
PICST_50259 (LSM2)
Spliceosome [BR:
pic03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PICST_50259 (LSM2)
Complex C
U2 snRNP components
PICST_50259 (LSM2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
SM-ATX
Gemin7
Motif
Other DBs
NCBI-GeneID:
4840955
NCBI-ProteinID:
XP_001386698
JGI:
50259
UniProt:
A3M080
LinkDB
All DBs
Position
8:complement(546497..546781)
Genome browser
AA seq
94 aa
AA seq
DB search
MLFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQYLNLKLDNISCVNGTNYPHLHSVKNL
FIRGSTVRYVHMSPNSVDCTLLQDASRRGMYKEI
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcttcagtttcttcaagactcttgtagaccaagaagtcactgtcgagttaaag
aacgacatcgaaatcaagggaaccttgaagtctgtagaccaatacttgaacttgaagttg
gacaacatctcgtgtgtgaatggaaccaactatccccatttgcattcagtgaaaaacttg
tttatcagaggttccactgttcgttatgtccacatgagtccaaactcagttgattgcaca
ttgttgcaggatgcttccagaagaggtatgtataaagagatatga
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