Scheffersomyces stipitis: PICST_50344
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Entry
PICST_50344 CDS
T01023
Symbol
RAD3
Name
(RefSeq) DNA helicase component of transcription factor b
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03022
Basal transcription factors
pic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PICST_50344 (RAD3)
09124 Replication and repair
03420 Nucleotide excision repair
PICST_50344 (RAD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_50344 (RAD3)
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_50344 (RAD3)
Enzymes [BR:
pic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PICST_50344 (RAD3)
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PICST_50344 (RAD3)
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PICST_50344 (RAD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
YtxC
Motif
Other DBs
NCBI-GeneID:
4841113
NCBI-ProteinID:
XP_001386596
JGI:
50344
UniProt:
A3M0P3
LinkDB
All DBs
Position
8:926894..929275
Genome browser
AA seq
793 aa
AA seq
DB search
MKFFIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ
MHYPEHRKIVYCSRTMSEIEKALIELHKLMEFRSTELGYVEEFRGLGLTSRKNLCVHPTI
SQERKGNVVDEKCRRITNGQLKERIAKGLVTPDQEVNHAEANTLCDMHENMNDMDQHNLI
PAGVYSFDALIKYCKQEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDSI
IIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGDAVDEMKAHDSEKLQNEYEKLVE
GLRQAEIARDEELFMSNPTLPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHVI
SETPISFLQHLKELTFIDRKPLRFCSERLSLLVRTLELSEIEDFHALKDIATFATLVSTY
DTGFQLILEPFESEGSTVPNPILHFICLDASIAIKPVFERFSSVIITSGTISPLDMYPKM
MNFQTVIQESYTMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFSKI
TPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKYKLILVETPDAQETSLALETYRKACSN
GRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIREND
FLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSKKKNQLPKWIAQALNDSDTNLSTDM
ALATARKFLRSLAQPANPKDQEGVSVWNIEQLQQFQQQQQMRMEALGVAKEKGNGDAAEE
DFMDIDDDDLDLL
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgaagttctttatcgatgatcttcccgtgttgttcccgtatccccggatatacccggaa
cagtatgcgtatatgtgtgatatcaagaagactcttgatgtaggaggaaattgtatcctt
gaaatgccttcaggaactggtaagactgtttcgttgttgtcgctaacagtagcctatcag
atgcattacccggagcaccgtaagattgtatattgttcgcgtacaatgtctgaaatcgag
aaagcgctaattgagttgcacaagttgatggagttcagatcgacagagttggggtatgta
gaagaattccgtggattgggacttacctccagaaaaaacttatgtgtccatcccacaata
tcccaagaaagaaagggaaatgtagttgatgaaaagtgtcgtagaatcacgaacggccag
ttgaaagagagaatcgcgaaagggcttgttactccagatcaggaggttaaccatgctgaa
gccaacaccctctgtgatatgcacgagaacatgaacgacatggaccagcacaatttgatt
cccgcgggcgtatactcatttgacgcgttgatcaagtattgtaagcaagaaggaacttgt
ccttacttcacagtgagaagaatgattcccttctgtaatatcattatttactcgtatcac
tacttgttggatcccaagatcgcagaaagagtctctaaggagctttctaaagacagtatc
atcatctttgatgaagcgcacaacattgataacgtctgtattgagtcgttgtctctagac
ttaactgatgataccttgaaaagagccaccagaggagccaacaagttgggagacgctgtg
gacgaaatgaaagcccatgatagtgaaaagctccagaacgaatacgagaagttggtagag
ggcttgcggcaggcagaaattgcgagagatgaagagcttttcatgagcaacccaacattg
ccgcaggatttgctcgacgaagctatccccggaaacatccgcaaggctgaacatttcatc
tcgttcttgaagcggtttatagaatatttgaaaacgagaatgaaagtgctacacgttatt
agtgaaactcccattagcttcctacagcatttgaaagaattaacgttcatagataggaaa
ccattgagattctgttctgagcggttatcacttttggtgagaacgttggaattgtctgaa
attgaagatttccatgccttgaaggatatcgctacatttgctacactagtttccacatac
gatactggattccagcttatcttggaaccatttgaatcagaagggtctacggtgcctaat
ccaatattgcatttcatctgtttggatgcatctattgcaatcaaacctgtgtttgagcgt
ttctcctcagtgatcatcacctcaggaaccatttcacctttggacatgtatccaaagatg
atgaactttcagactgtgatacaggaatcttataccatgacattggctaggagatcattc
ttgcccatgatcgtcacaaagggctcggatcaagtgtccatctcatccagatttgaaatc
cgtaacgatccatcggtggtgagaaattatgggtcacttttgattgaattctccaagata
acaccagacggaatggtggttttcttcccctcgtatctatacatggagtctatcatttct
atgtggcagactatgggtgttttagatgaggtgtggaaatacaagcttatactcgtagaa
actcccgatgcccaagagacatcgttggccttggaaacttatagaaaggcctgttctaat
ggtagaggtgccgtcttgctttctgttgctcgtgggaaggtatctgaagggatcgatttt
gatcaccattacggaagaactgtactaatgattggtattccattccagtatacagagtcc
agaatcttgaaagcacgtttagaattcatgagagaccactttcagatcagagaaaacgat
ttcttatctttcgatgccatgagacatgccgcgcaatgtttgggaagagtcttgagagga
aaagatgactacggtattatggttcttgcagatagaagattttccaagaagaagaaccaa
ttgcctaaatggatagcccaagccttgaatgactccgataccaatttgtctacagatatg
gcgcttgccactgccaggaaatttttgcggagtcttgctcagccagcaaatcctaaggat
caagaaggtgtttctgtgtggaacatcgagcaattgcaacagttccagcaacagcagcag
atgagaatggaggcattgggagttgcgaaagaaaaaggaaacggcgatgctgccgaagag
gatttcatggatattgacgatgacgaccttgacttgttatag
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