Scheffersomyces stipitis: PICST_51414
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Entry
PICST_51414 CDS
T01023
Symbol
HCA4
Name
(RefSeq) ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1)
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
pic
Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pic03009
]
PICST_51414 (HCA4)
Enzymes [BR:
pic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PICST_51414 (HCA4)
Ribosome biogenesis [BR:
pic03009
]
Eukaryotic type
90S particles
Helicases
PICST_51414 (HCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
Helicase_C_2
PSP
Motif
Other DBs
NCBI-GeneID:
4851348
NCBI-ProteinID:
XP_001387532
JGI:
51414
UniProt:
A3GGE9
LinkDB
All DBs
Position
1:1560007..1562304
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AA seq
765 aa
AA seq
DB search
MAKPRRNNKNKKGQSRSQAREKEEAELLKLQERIDQYDPAVDEKSISQFSDLPITQETLR
GLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVVESLIRNKITEHDGL
AALIVSPTRELAVQTFEVLTKIGKYNTFSAGLVTGGKDVQYEKERVSRMNILVGTPGRIS
QHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTRQTLLFSATVSDSVKD
LARLSLTNPKRIGVSSDQDVSATPESLDQYYIRIPLDEKLDVLWSFIKSHLKSKILVFFS
SSKQVQYAYETFRTLQPGISLLKLYGRHKQTSRLETTVKFTQAQYACLFATDIVARGLDF
PAIDWVVQVDCPEDAVTYVHRVGRAARFGRQGKSLLMLLPSEEEGMLKRLENNKIEPKFM
NIKQKSKKSIRPQLQSLCFKDPMIKNLGQRAFISYYKSVYIQKDKDVFKVEELPSEKYAA
SLGLPGAPKIKIKGGSSSKEKKNASRQLVALSKTNEDGESVENEASKVRTKYDRMFERKN
QNVLSEHYLKLNGSQTKEDEDEEEEDDFMSVKRKDHELTEVELPDLTIPVSKRQAKKALS
KKLSISTKGNPTKLKFDDEGVAHAIYELEDEEDFIKRGDAKEQKKAFVSRETEVMNEADE
EDKIMAKEKRQEKKRKRKEVEKRMRDEELQSGDDEETVYTLGGDVDLERDMEYSTDEEEQ
PQNKKPKWFENDKHNRKNPVNHIVEIDEPETLEDLESLTARLLQH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacctcgtcgaaacaataagaacaagaagggccagtcgagatctcaagcccgt
gaaaaagaagaggccgagttgctcaaattgcaagagagaatagaccaatatgatcctgcg
gtagatgaaaaatctatatctcagttcagcgacttgcccattacccaggaaactctccgt
ggactcaacgagtccagtttcatgtcactcacagatattcagaagaagacaatacctata
gctttgaagggagaagatcttatggggacagccagaactggctctggtaaaactttggca
ttcttgattcctgtggtggagtctttaataagaaacaagatcactgagcacgatggtctt
gctgctttgattgtttctcctaccagagagcttgcggtccagacttttgaggttttgacg
aaaatcggcaagtacaacactttctcagccggtttagttactggaggaaaggatgtccag
tacgagaaggaaagagtttcacgtatgaatattcttgtaggtacaccaggtagaatttct
caacatcttaacgaggctgtaggaatggaaacatccaatttgcaggtgttggtgttagac
gaagctgacagatgtttggatatgggattcaagaaacagatagataacattgtgggccat
ttacctcctactagacaaacccttttgttctccgctacagtttctgatagtgttaaggac
ttagccagattatctttgacaaatcctaaaagaatcggagtatcatctgaccaggatgtc
tctgctacacctgaatccttggatcagtactatatcagaattcctttggatgagaagcta
gatgtgctttggtctttcattaagtcgcatttgaagagtaagatattggtgtttttttct
tcatcaaagcaggttcaatacgcttatgagacgttccgtactttgcagcccggtatctct
ttgttaaagttgtatggccgacacaagcagacatctcgtcttgaaaccaccgtaaaattc
acacaggctcagtatgcctgtcttttcgctactgacatcgtagccagaggtttggacttt
ccggccatagactgggttgtgcaagtagattgtcctgaagatgcggtcacttatgtccat
agagtgggacgtgctgctcgtttcggacgccaaggtaagtctctcttgatgttgctacca
tcagaagaagaaggtatgttgaagcgcttggagaacaacaagattgaacccaagttcatg
aacattaagcagaagagcaagaagagcatcagaccacaattgcagtctttgtgtttcaaa
gacccaatgatcaagaatctcggtcagagggcttttatctcgtactacaaatcggtgtat
atacagaaagataaggatgtgttcaaagttgaagaattgccatctgaaaagtatgctgct
tcgttgggtttgccaggagctcctaaaatcaagataaagggaggaagctctagcaaagag
aagaagaatgcttctagacaacttgtagcattgtccaagactaacgaggatggagagtct
gtggagaatgaagcttctaaagttagaaccaagtacgaccgtatgtttgaaagaaagaac
cagaacgttttgtctgaacactacttgaagttaaacggtagccagactaaggaagatgaa
gacgaagaagaagaagatgacttcatgtctgtgaaaagaaaggaccacgagttaacagag
gtagaattacctgacttgactattccagtttcgaagagacaagccaagaaggctctttcc
aagaagttgtctatttctactaaaggcaaccctacgaagttgaagtttgatgatgaagga
gttgcgcatgccatttatgaattggaagacgaagaagacttcatcaagcggggcgatgcc
aaagagcagaagaaggcatttgtttcaagggaaactgaagtaatgaacgaagccgacgag
gaagacaagataatggctaaggaaaagagacaagaaaagaagaggaaaagaaaggaagtg
gaaaaaagaatgagagatgaggaattacaactgggcgacgacgaagaaaccgtctacacc
cttggcggagatgtagacttagaaagagacatggagtactctactgatgaggaagaacag
ccacagaataagaagcctaagtggtttgaaaatgacaagcacaacaggaagaatccagtt
aaccatatcgtggaaatcgacgagccagaaactttggaagatttggaatctttgacggcc
agattgttacagcattaa
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