Scheffersomyces stipitis: PICST_52941
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Entry
PICST_52941 CDS
T01023
Symbol
FAL1
Name
(RefSeq) RNA helicase involved in maturation of 18S rRNA
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03013
Nucleocytoplasmic transport
pic03015
mRNA surveillance pathway
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_52941 (FAL1)
09122 Translation
03013 Nucleocytoplasmic transport
PICST_52941 (FAL1)
03015 mRNA surveillance pathway
PICST_52941 (FAL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_52941 (FAL1)
03041 Spliceosome [BR:
pic03041
]
PICST_52941 (FAL1)
03009 Ribosome biogenesis [BR:
pic03009
]
PICST_52941 (FAL1)
03012 Translation factors [BR:
pic03012
]
PICST_52941 (FAL1)
Enzymes [BR:
pic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PICST_52941 (FAL1)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PICST_52941 (FAL1)
mRNA cycle factors
Stress granule specific factors
PICST_52941 (FAL1)
Spliceosome [BR:
pic03041
]
Complex C
Other components
EJC/TREX
PICST_52941 (FAL1)
Ribosome biogenesis [BR:
pic03009
]
Eukaryotic type
90S particles
Helicases
PICST_52941 (FAL1)
Translation factors [BR:
pic03012
]
Eukaryotic type
Initiation factors
eIF-4
PICST_52941 (FAL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NAT10_TcmA_helicase
AAA_30
CMS1
nSTAND1
StrH_N
AAA_22
Motif
Other DBs
NCBI-GeneID:
4851152
NCBI-ProteinID:
XP_001387431
JGI:
52941
UniProt:
A3GFV3
LinkDB
All DBs
Position
1:<1059236..>1060435
Genome browser
AA seq
399 aa
AA seq
DB search
MDDFDRDLDNELEFSHKSTKNVKVHATFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQI
INGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDY
MNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADEL
FTKGFKEQIYEVYKYLPPSVQVVVVSATLSREVLEMTNKFTTDPVKILVKRDQITLEGIK
QYHVQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMK
QDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFG
RKGVAINLITKEDVATLRDFEKYYSTKIREMPMNINDIM
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttcgacagagatttggacaacgaattggagttctcccacaagtccactaag
aatgttaaggtgcatgcgacttttgaaagcatgaacctcaagccagacctcttaaaaggc
atatatggctatggttttgaggctccttcagctattcagtcccgtgccatcatgcagatc
attaacgggagagatactattgcccaggctcaatcgggaactgggaaaacagccactttc
tccataggaatgctccaagccatagatactaatgccaaagactgtcaggcgctaattctt
tccccaactagagagttggcagttcagattcagaacgtcgttaaacatttaggtgactac
atgaacatccacacacatgcttgtataggaggaacgcatgtgggcgatgacatcaagaag
ttgaaacagggccaacagattgtgagtggaactccaggtagagtcgtggatatggtcaag
agacagcaattatccactagaaatatcaagatgttgattttggacgaagctgacgaatta
ttcaccaaaggtttcaaagaacaaatctacgaagtttataagtacttgcccccttcagtc
caggtggttgtagttagtgcaactctttcacgagaagtgttggaaatgaccaacaagttc
accacagaccctgtcaagattttggtgaagcgagaccagatcactcttgaaggtattaaa
cagtatcatgttcagtgtgagaaagaagactggaagtttgatacgttgtgtgatttgtac
gacaacttgaccatcacccaggccgtgatcttctgtaacaccaagctcaaagtcaactgg
ctcactgaccagatgagaaagcagaactttactgttgtgtctatgcatggtgacatgaaa
caggacgaacgtgactccatcatgaacgatttcagaacgggaaactcccgtgtgttgatt
tccaccgatgtgtgggccagaggaattgatgtgcaacaagtttcgctcgtgataaactac
gatttgcccactgataaagagaattatatacacagaatcggtagatccggaagatttgga
agaaagggggtagccatcaatttgatcactaaggaggatgttgctacgttgagagacttt
gagaagtattactcgacgaagatcagagaaatgcccatgaacattaacgatataatgtag
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