KEGG   Scheffersomyces stipitis: PICST_54497
Entry
PICST_54497       CDS       T01023                                 
Name
(RefSeq) predicted protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
pic  Scheffersomyces stipitis
Pathway
pic03018  RNA degradation
pic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PICST_54497
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PICST_54497
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pic03019]
    PICST_54497
   03041 Spliceosome [BR:pic03041]
    PICST_54497
Messenger RNA biogenesis [BR:pic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PICST_54497
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PICST_54497
Spliceosome [BR:pic03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PICST_54497
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 4836796
NCBI-ProteinID: XP_001383065
JGI: 54497
UniProt: A3LPF4
LinkDB
Position
2:complement(1520039..1520537)
AA seq 147 aa
QLPLYLLTAAKTKQILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVY
IRGNHIKYLRLPEEIMDYAKEQNILNMEQRNRNQKRRGNSNYSHNTNNNNRRGGNRNGGG
YNSGRRFNGNNANANANAHSNTNQAQN
NT seq 444 nt   +upstreamnt  +downstreamnt
cagttaccattatacttgttaacagctgctaagacaaagcagatattgatagaattgaag
aatggcgagaccttgaacggtggcctagtcaactgtgattcgtggatgaacttgacgttg
aaggatgtcattcagacatcttctaatggggagactttcttgaagattcctgaagtctac
atcagaggaaaccacatcaagtacttgagattgccagaagaaataatggactatgctaaa
gaacaaaacatcttgaacatggaacagagaaacagaaaccaaaagagaagaggaaacagc
aactacagccacaacactaataacaacaatagaagaggaggaaacagaaacggaggaggt
tacaactcgggccgtcgtttcaacggcaacaacgctaacgccaatgctaatgcacacagc
aacaccaaccaagcccagaactag

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