Scheffersomyces stipitis: PICST_54497
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Entry
PICST_54497 CDS
T01023
Name
(RefSeq) predicted protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_54497
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_54497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_54497
03041 Spliceosome [BR:
pic03041
]
PICST_54497
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PICST_54497
mRNA degradation factors
5'-3' decay
Lsm complex
PICST_54497
Spliceosome [BR:
pic03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PICST_54497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
4836796
NCBI-ProteinID:
XP_001383065
JGI:
54497
UniProt:
A3LPF4
LinkDB
All DBs
Position
2:complement(1520039..1520537)
Genome browser
AA seq
147 aa
AA seq
DB search
QLPLYLLTAAKTKQILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVY
IRGNHIKYLRLPEEIMDYAKEQNILNMEQRNRNQKRRGNSNYSHNTNNNNRRGGNRNGGG
YNSGRRFNGNNANANANAHSNTNQAQN
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
cagttaccattatacttgttaacagctgctaagacaaagcagatattgatagaattgaag
aatggcgagaccttgaacggtggcctagtcaactgtgattcgtggatgaacttgacgttg
aaggatgtcattcagacatcttctaatggggagactttcttgaagattcctgaagtctac
atcagaggaaaccacatcaagtacttgagattgccagaagaaataatggactatgctaaa
gaacaaaacatcttgaacatggaacagagaaacagaaaccaaaagagaagaggaaacagc
aactacagccacaacactaataacaacaatagaagaggaggaaacagaaacggaggaggt
tacaactcgggccgtcgtttcaacggcaacaacgctaacgccaatgctaatgcacacagc
aacaccaaccaagcccagaactag
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