Scheffersomyces stipitis: PICST_58253
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Entry
PICST_58253 CDS
T01023
Symbol
RLR1
Name
(RefSeq) THO2 plays a role in transcriptional elongation
KO
K12879
THO complex subunit 2
Organism
pic
Scheffersomyces stipitis
Pathway
pic03013
Nucleocytoplasmic transport
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_58253 (RLR1)
09122 Translation
03013 Nucleocytoplasmic transport
PICST_58253 (RLR1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_58253 (RLR1)
03041 Spliceosome [BR:
pic03041
]
PICST_58253 (RLR1)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
PICST_58253 (RLR1)
Spliceosome [BR:
pic03041
]
Complex C
Other components
EJC/TREX
PICST_58253 (RLR1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PICST_58253 (RLR1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
4838920
NCBI-ProteinID:
XP_001384013
JGI:
58253
UniProt:
A3LT02
LinkDB
All DBs
Position
4:<287292..>292271
Genome browser
AA seq
1574 aa
AA seq
DB search
MSAIYTYFTHEVISEFEGNGSESVIEVLDSVSFSEAGSDSVEESETIVATIFTELLLSFE
DDKLSLDPIMQFLFSSIKNDNVARIFCQVLSVFPATEKISNLLQLLCRKQNIIKPEAIVS
YISTDLLKESDVVPKAVLTKTLNGRIRDEFYTQKKYNLLHEEIDGYSKFIVEIYNIFRFD
ETEFQVDSALQIIEKLIGHFSLDPNRCLDILLEIIESSFVCNCEMAIRLLRKSRWWPTKE
SDNSSIETLSYGGSEPGAKVLGLKLLKSPSDKDLPETFKIMVSCLIKEGFISFGDIYQYL
RPSDEDMEVLEKEYKKKLEDDVAKAGANALALAAPLADDEDEGKKKEKTISKNVPEPLSF
EKKLQLNFKYQFLRVLLGNGLYWPSIFILTKYPFLANVDQDIPELLNRLFNAMISPLFNQ
ISPFTKDELSSLQTSGKLAFSRPHNIVEYDDFPCQSLYTFKTNIKSYSQKKFIYFYSSWS
NGLPTIDSVFELFRVSKEFLKFIGVNLSHDIELFTKICEIGIWDLKNNPEDSNRKEEWFH
YFRNFIFPAMAVIEENSIAIDKAFALLSFYPLEDRFSVYGELYQVLAKNNPLVKMAYGKA
EKATKAVLKRLSKENVRPMMRRLAKISFSNPLPCFLTILQQIESYDNLNTLVVETARYFN
KYGWDNLTAAILMRLTLAGRSSTQDNGMAERQWLQSLASFIGKICQRYPQEVDLHTIINF
LLKSFYVGESIGLIVLKEIFIAMGGIQTITNLTLQQIDLINCGSSLEKLVFRTINDLRYE
RQKSGSYLVKAFIDLDAINELLAVLCNLSNDLESTFNETHLKVLTSRIDDVKAVIRLFIT
LVNFFGSKEDLEKSFMSIAELTDTYNVPLQWSFELWRPLLAANESTEVLSAGFVSTFWQL
ALYDLNYSADLYTNETVKIESNIRSLKEWISINSRDKDVAKATIEKARKDLKQNEEFLKL
IPSERDIHSEHNNSVIARLNKESSHWFLKNGKESVRLQMQTFLQLCILPRAVQSSFDAVF
AARLIFKLHDFQTPKFYLIILLDELIKSRVLFATLFTSTPTEAENLGLFFADILRTLNTW
RNEAVFDKIVSNSSILDETDEALSFNDFRTRLYEFHEIILKDIASALEVTEYMSRRNGIT
FLKNLLGVYPNIEDQCEKIVALIDNIAHKETREDLILSSRALVGHMKSRTQEWVHLWDFL
PMEDEEKEAHVKERKHIEDERLKEKKRLEEEKRKKKEAERKKEDEKRKEEQKALEQAARE
EEIKKQLNYDSQKSSTPRPNTRGTSSSSRGRYDNYANAGPSTADTKWKNEATNKSQRGRQ
TPVGPKGNEPEQKYEIKENKSNISQPKDVPSHPASVLNHQTDRSDKNHDRRETTPSKISN
LKARLSLAKKELQESRGDITENSKESTPRAPTPRESNKAPTRESNKAPVPHQNTSSNDRS
VSNRHKEDSRPARAPLPTQSSVAASRDRGYNKEQFSQGRFANSKNTNRPSQGATNRGNQD
SKNTNGEGKTSGGRFEEKQSRNRSDDSGRDSGRGGRDRIDGTNSTVPPPPPPPPRKSRGD
RFEEGRSGRYDNKR
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctatatatacatacttcactcatgaagtcatttctgaatttgaaggcaatggc
tccgaatcagtaattgaggttttggactcagtcagtttttcagaagcaggatcagattcg
gttgaagagagtgaaaccatagtagccactattttcaccgagcttttgttatcttttgaa
gacgacaaactcagtcttgatccgataatgcagttcttattttcctcaataaaaaatgat
aatgtagcccggatcttttgtcaagttctcagtgtatttccagctaccgagaagattctg
aatttgctccagcttttatgccgaaaacaaaacatcatcaaaccagaagctatagtgtcc
tatataagtacggatttgttgaaggagctggatgttgtgcccaaggctgttttgaccaag
acgcttaacggacgtatcagagatgagttctatactcagaagaagtacaacctcttgcac
gaggagatagatggctactccaaatttatcgtagaaatctataacatcttccgatttgat
gagactgaatttcaagtcgattctgcacttcagatcattgagaaacttattggtcacttt
agtttggatcctaataggtgtttggacattttgctagaaatcatcgagagttccttcgta
tgtaattgcgagatggcaataagattgctcaggaagtcgcgttggtggccaacaaaagaa
agcgacaactcctctattgagacgctatcgtatggaggaagcgaacctggcgccaaagtc
ttgggattgaagttattgaagagtccttcagataaagatttgcccgaaacgttcaaaatc
atggtcagctgtttgataaaggaaggcttcatcagtttcggtgatatttaccaatacctt
agaccttctgacgaagatatggaagttcttgaaaaggagtacaagaagaaactagaagac
gatgtggcgaaagctggagcaaacgctctagcattggcagctcctttggcagacgatgaa
gatgaaggcaaaaaaaaagaaaaaacaattagtaaaaacgttccagaaccactttccttt
gaaaagaagttgcaacttaacttcaaataccagttcttacgtgttttgctaggaaatggt
ctctactggccctctattttcatactaacaaagtaccctttcctcgcaaatgttgatcag
gatattccagaattattgaacagactattcaacgccatgatatcaccacttttcaatcag
atatctccatttaccaaggatgaattgtcttctttgcagacttcaggaaaactcgccttt
tccagacctcacaacattgtagaatatgacgatttcccttgtcaaagcttgtacactttc
aagacgaacatcaagagctactctcaaaagaagtttatttacttctattcgtcttggtct
aacgggttacccacaatcgatagcgtttttgaactcttcagagtttcaaaggaattctta
aaattcatcggtgtcaatttatcacacgatatcgagctttttaccaaaatatgtgagata
ggtatttgggacttgaaaaataacccagaagactccaacagaaaagaagaatggttccat
tacttcagaaacttcattttccctgccatggctgtcatcgaagaaaactcaattgcaatc
gacaaggcatttgcattgctatcattttatccgttggaagacagatttagtgtgtatggg
gaattgtatcaagttcttgccaaaaacaacccactcgtaaagatggcatacggaaaagcc
gaaaaagctaccaaggctgtcttgaaaagactttccaaagaaaatgtccgtcccatgatg
agaagacttgctaagatcagtttttctaatcctttaccctgtttcttgactatcttacaa
caaattgaaagttatgataacttgaacaccttggttgttgaaactgccagatatttcaat
aaatatggatgggataatcttactgctgctattttgatgagattgacccttgcaggaaga
tcatcaacacaagataatggaatggcagaacgtcaatggcttcaatcattagcttctttt
ataggtaaaatctgccaacgatatcctcaagaggttgatttgcatactattattaatttc
ttgttgaaatcgttttatgttggagaaagcattgggttgatagtcttgaaggaaatcttc
atagcaatgggagggattcagaccattaccaacttgacattgcaacaaatcgacttgatc
aactgtggatcttctttggagaagttggtcttcagaactatcaatgatcttagatacgag
agacaaaagtccggttcatatttggtaaaagcttttattgacttggacgccataaacgaa
ttattggctgtactttgtaacttatcaaatgatctcgagtctacgttcaacgaaacgcat
ttgaaagttttgactagtagaattgatgacgtcaaagccgtgatacggcttttcattact
ttggtgaatttctttggaagtaaagaagatcttgaaaaatcattcatgagtattgcagaa
ttgacagacacttataatgttcctcttcagtggtcatttgaattgtggagaccgctctta
gcagccaatgaatctactgaggtattatcagcaggttttgtttcaaccttctggcagttg
gcattgtatgatcttaattactcggctgacttatataccaatgaaactgtcaagattgag
tctaacataagaagtctcaaggaatggatttcaatcaatctgcgcgataaagatgtagca
aaggcaacgatcgaaaaagccaggaaagatttgaaacagaacgaagagttcttgaagctt
attccactggaaagagatatacattctgaacataacaactctgtaatcgcgagattgaac
aaagagtcttcacattggtttttaaagaatggaaaggaaagtgtaagattgcaaatgcaa
acatttcttcagttgtgtattttaccaagagctgttcagtcgtcatttgatgctgttttt
gctgcaagattaatcttcaaattgcacgactttcaaactcctaaattttacttgataatc
ttgttagacgaattgattaagagcagggtcttgtttgctactttgttcacttcaactcct
acagaggctgagaatttgggtttattctttgctgatatcctccgtaccttgaatacctgg
agaaatgaagcggtttttgataagattgtaagtaattcttctatcttggacgaaacagac
gaagctttgtcttttaatgatttcagaacaagattgtacgaatttcatgaaataatcttg
aaagacatagcatctgctttagaggttactgagtacatgtcgcgtcgtaacgggattaca
ttcttgaaaaatctccttggtgtttacccaaatatcgaagatcaatgtgaaaagatagtt
gctcttatagacaatattgcccacaaggagacaagagaggatttgatcttatcatcacga
gctttggttggacatatgaaatctagaacacaagaatgggtccatctctgggacttctta
cctatggaagatgaagagaaggaagctcatgtgaaggaaagaaagcatatagaagatgaa
agattgaaagaaaagaagagattggaggaagaaaagagaaagaagaaagaagcagaaaga
aagaaggaggacgaaaagagaaaggaagaacagaaggccttagagcaggccgctagagaa
gaagagataaagaaacaactcaactatgactctcagaaatcttcaactccacggccaaat
actaggggcacatccagttcatccagaggtcgatatgacaattatgccaacgctggacct
tctactgcagacactaaatggaagaatgaagcaaccaataagtctcaaagaggcagacag
actcctgtggggcccaaaggtaacgagcctgaacaaaagtatgagatcaaggagaacaaa
tctaatatttcccaaccgaaggatgtaccttcacacccagcatcggttctcaaccatcaa
acagacaggagcgacaaaaatcacgatcgtagagaaacgactccttctaagattctgaac
ttgaaagcaagattgtctttggcaaagaaggagcttcaggagtcacgtggagatattact
gagaattcaaaagagtcaactcccagagctccaacacccagggagtctaacaaagcacct
actagagagtctaataaagctccagtgcctcatcagaacacttcatccaacgacagatct
gtttctaatcgtcataaagaggattcgagaccagcaagagcaccattacctactcaaagt
agcgttgcagctctgagagacagaggctataataaggagcagttttctcagggtagattt
gcaaactcgaagaacacaaatagaccctctcagggtgcaacgaatagaggtaatcaagat
tcaaagaatacaaatggtgaaggaaaaacaagtggaggcagatttgaagagaagcaatct
agaaatcgttctgatgattcaggaagagattcaggtagaggtggtagagatagaattgac
ggaacaaattctactgttccacctcctcctcctccccctccaagaaagagtcgtggtgac
agatttgaagaaggaagatctgggaggtatgacaataagaga
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integrated database retrieval system
