KEGG   Scheffersomyces stipitis: PICST_60537
Entry
PICST_60537       CDS       T01023                                 
Symbol
RCF3
Name
(RefSeq) DNA replication factor C
  KO
K10756  replication factor C subunit 3/5
Organism
pic  Scheffersomyces stipitis
Pathway
pic03030  DNA replication
pic03410  Base excision repair
pic03420  Nucleotide excision repair
pic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PICST_60537 (RCF3)
   03410 Base excision repair
    PICST_60537 (RCF3)
   03420 Nucleotide excision repair
    PICST_60537 (RCF3)
   03430 Mismatch repair
    PICST_60537 (RCF3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pic03032]
    PICST_60537 (RCF3)
   03036 Chromosome and associated proteins [BR:pic03036]
    PICST_60537 (RCF3)
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_60537 (RCF3)
DNA replication proteins [BR:pic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    PICST_60537 (RCF3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    PICST_60537 (RCF3)
Chromosome and associated proteins [BR:pic03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    PICST_60537 (RCF3)
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     PICST_60537 (RCF3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    PICST_60537 (RCF3)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_lid_RFC1 AAA_assoc_2 RuvB_N ResIII AAA_11 AAA_14 AAA_22 AAA_30 DUF815 Rad17 RCF1-5-like_lid AAA_16 AAA_24 AAA_7 DEAD AAA_5 AAA_19 Cdc6_lid bpMoxR AAA_28 nSTAND6 Viral_helicase1 nSTAND3 Mg_chelatase Trns_repr_metal AAA_3 SLFN-g3_helicase RNA_helicase DNAX_ATPase_lid AAA_18 nSTAND_NTPase5 IstB_IS21
Other DBs
NCBI-GeneID: 4839271
NCBI-ProteinID: XP_001385155
JGI: 60537
UniProt: A3LVH9
LinkDB
Position
5:complement(760467..761435)
AA seq 322 aa
YRVEKYRPSTLDEVYGQEEIVQTVKKFAHENRLPHLLFYGPPGTGKTSTIIALAREIYGT
NYKNMVLELNASDDRGIDVVRNQIKNFASTMQIFSRGFKLIILDEADAMTAVAQNSLRRI
IEKYTKNTRFCILANYAHKLNPALLSRCTRFRFHPISEDAIKDRIQNVIIKESLKIDPPA
EAALLKLSKGDMRRALNVLQACKSAVDSADEEITEDMIYECVGAPHPKDIEVVLDSILKD
DWTTAYITINKYKTTKGLALIDLISGFIEILNQYKLQGKTRIEIFKGLSEIEYGISRGGN
DKIQSSAIIGVIKDALEYEAVA
NT seq 969 nt   +upstreamnt  +downstreamnt
tacagggttgaaaagtaccgtccatctaccttagacgaggtgtacggccaagaagagatt
gtccagacagttaagaaatttgcccatgaaaacagattgccccatttgctattctatgga
cctcctggtactgggaaaacttctactatcatagcgttggcgcgcgagatctacggcacc
aactacaagaacatggttcttgagctcaatgcatcggacgacagaggtattgacgtagtt
agaaaccagatcaagaactttgcctccaccatgcagattttttccagaggtttcaagttg
attatcttggatgaagccgatgccatgacagctgtggcccaaaactcgttgagaagaatc
atcgagaagtataccaaaaacacccgtttctgcattcttgccaattatgctcacaaactc
aatccggcattgctttctagatgtacgcgtttccgcttccatcccatctctgaggatgcc
attaaagatagaatccagaacgtcatcatcaaagaaagtttgaaaatcgatcctccggct
gaggccgcattgcttaagctttcgaagggagacatgaggagagcattgaatgttttacaa
gcgtgcaagtcagccgtggactctgccgatgaagagattactgaagatatgatctatgaa
tgcgtaggcgcaccacatccgaaagatatagaagtagttctagactccattttgaaggac
gactggactacggcttacataaccattaacaagtacaaaaccactaaaggtttggcactc
atagacttgatttcaggcttcatcgaaatcttgaatcaatacaagttgcagggcaagaca
agaatcgaaattttcaagggtctaagcgagatagagtacggaatatccagaggaggaaac
gataagatccagagcagtgctatcatcggagtgataaaggatgcgttggaatacgaagca
gtagcttag

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