KEGG   Scheffersomyces stipitis: PICST_61635
Entry
PICST_61635       CDS       T01023                                 
Symbol
RPB9
Name
(RefSeq) DNA-directed RNA polymerase II
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pic  Scheffersomyces stipitis
Pathway
pic03020  RNA polymerase
pic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PICST_61635 (RPB9)
  09124 Replication and repair
   03420 Nucleotide excision repair
    PICST_61635 (RPB9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pic03021]
    PICST_61635 (RPB9)
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_61635 (RPB9)
Transcription machinery [BR:pic03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     PICST_61635 (RPB9)
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PICST_61635 (RPB9)
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Zn_ribbon_RPB9 Cas12f1-like_TNB DUF3716 DZR RUBY_RBDX Zn_ribbon_recom HVO_0758 Zn_ribbon_Nudix C1_1 Zn_ribbon_13 Zn_Ribbon_1
Other DBs
NCBI-GeneID: 4840207
NCBI-ProteinID: XP_001385993
JGI: 61635
UniProt: A3LYD6
LinkDB
Position
6:complement(1519303..1519641)
AA seq 112 aa
MASFRFCAECNNMLYPKEDKDGQRLLYACRNCGYTELAENPKVYRHELITNIGETAGVVQ
DIGSDPTLPRSDKECTKCGNKECVFFQSQQRRKDTSMILFYVCLNCKTVFQA
NT seq 339 nt   +upstreamnt  +downstreamnt
atggcctcgttccgtttctgcgcagaatgcaacaacatgttatatccaaaagaagacaag
gatggccagagattactctatgcctgtcgtaattgtggctatactgagttggcagaaaac
ccaaaagtgtacagacacgagttgattacaaacatcggagaaactgctggggttgtccag
gacattggaagtgatcctactttacccagatctgataaggaatgtacaaaatgtggtaac
aaagagtgtgttttcttccagtcacaacagagaagaaaggatacctctatgatattgttt
tatgtctgcttgaactgtaagacagttttccaggcgtaa

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