Scheffersomyces stipitis: PICST_62830
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Entry
PICST_62830 CDS
T01023
Symbol
SPB4
Name
(RefSeq) ATP dependent RNA helicase
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
pic
Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pic03009
]
PICST_62830 (SPB4)
Enzymes [BR:
pic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PICST_62830 (SPB4)
Ribosome biogenesis [BR:
pic03009
]
Eukaryotic type
Pre-60S particles
Helicases
PICST_62830 (SPB4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTT_SPB4
CTE_SPB4
ResIII
Cas3-like_C_2
Pyocin_S
AAA_22
Spb1_C
Motif
Other DBs
NCBI-GeneID:
4839908
NCBI-ProteinID:
XP_001385748
JGI:
62830
UniProt:
A3LX02
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Position
6:complement(318927..320780)
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AA seq
617 aa
AA seq
DB search
METKKGSLDWKNLQYDLQPWIKEAIASLGFPTMTPVQAATIPLLSGNKDVVVEAVTGSGK
TLAFAIPVLQKVSNRLYDSQEEGEAPEKVKQGHMLAIVLSPTRELASQIQSVFNNVIEYL
PEDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHILIATPGRMLDFMSSQYVKMNSVEIAIL
DEADKLLDFSFEKDVVNILKRLPKQRRTGLFSATISAAGNTIFRAGMNNPVKVAVKSKST
TANSAPSALHISYLMIEPEKKITTLIKLLHDYRYKKCIVYFPTCTSVKHFYSIFQKIVNG
NDNTESFKFYSLHGQLATKPRLRTLQSFTDGDVALNKHILMTTDVAARGIDIPDVDLVIQ
LDPPTDPDVFLHRCGRTGRANKVGRAIVMLNDGSRELDYVDFMEVKGVAMQEMPTPDLNQ
SDHQQFQDKLRKYMLDDRARHEIAIKSYVGFVRYYTKHMATSIFRYQTLDYLGIAKMYGL
LRLPKMPESKYIPNDNMPDDGWLGEPIDMDKYSYADNQQEASRLENLNAEKIKKIADAKR
RKELKVKNEAWSSKTETKETKQERREKMKRKREAIEKQIMEESSDDEETKVDWKDIVKSN
KKKKANSGSMQGSFDDL
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaaagaaaggttcactcgactggaaaaatctccagtatgacctccaaccatgg
atcaaagaagcgattgcctcgttggggttccctaccatgaccccagtacaagctgctacg
attcctttacttagtgggaacaaagatgttgtcgtagaagcagtgactggttcaggcaaa
actcttgcatttgctatacccgtcttacagaaagtctcgaaccgtttgtatgactcacaa
gaagaaggcgaagcccccgaaaaagttaaacaaggacacatgcttgctattgtattatct
cctactagagaactcgctagtcaaatccaatccgtattcaacaatgtcatcgaatattta
cctgaagataaaattcctattaaaacacagttgcttgtgggttccctttccacagtgaga
gatgacttggatcgtttcttgaaagataaacctcatatcttgattgccacacctggtaga
atgcttgacttcatgtcttcacaatatgtaaaaatgaattcggtagagatagctatttta
gatgaagcagacaagctattggacttctcattcgaaaaggatgttgttaacatcctaaag
agattaccaaaacaaagaagaacgggacttttttcagctactatttcagctgctggaaat
acaatttttagagcaggcatgaacaacccagtgaaggtggctgtgaagtccaagtctacc
actgccaactcagctccttcagcattgcatatctcctatctaatgatagaaccagaaaaa
aagatcactactttaataaagttattgcacgattacagatacaagaagtgtattgtatat
ttccctacctgtacatctgttaagcacttttattctatcttccagaaaattgtcaatgga
aatgacaacactgaatcgttcaaattctactcattacatgggcagcttgctaccaaacca
agattaagaacattgcaaagtttcacggatggagatgtggcattgaacaaacatatcttg
atgaccacagatgtagcagccagaggtatcgatatcccagatgtagacttggttatccag
ttagatcctccaactgatccagatgtgtttttgcacagatgtggtagaactggaagagcc
aataaggttgggcgtgctattgtcatgttaaacgatggtagtcgagagctagactatgtt
gatttcatggaagtgaagggtgtagcaatgcaagaaatgccaacgccagacttgaaccag
agtgaccatcaacagttccaagacaaactcagaaagtatatgcttgatgacagggcccgc
catgaaattgcaatcaagtcgtatgttggatttgtcagatactacaccaaacatatggca
acttctatcttcagataccagactttggattatcttgggatagctaagatgtatgggttg
ttgagattacccaaaatgcccgagtcgaaatatatacctaatgataatatgcctgatgat
ggatggctaggcgaacccatcgatatggacaaatatagttatgcagataaccagcaggaa
gcatcgagattggaaaacttgaatgcagaaaagatcaagaagatagctgatgcaaagagg
agaaaggagttgaaggtcaaaaatgaagcatggtccagtaagacagaaacaaaggaaacg
aaacaagaaagacgggagaagatgaagagaaaaagagaagccattgaaaaacagatcatg
gaagaatcttcggacgacgaagagacaaaagtcgactggaaggacatcgtaaagagtaac
aagaagaaaaaggcaaactctggcctgatgcaaggttcattcgatgatttatag
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