Scheffersomyces stipitis: PICST_64197
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Entry
PICST_64197 CDS
T01023
Name
(RefSeq) predicted protein
KO
K15147
mediator of RNA polymerase II transcription subunit 5
Organism
pic
Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_64197
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Middle
PICST_64197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med5
Motif
Other DBs
NCBI-GeneID:
4840875
NCBI-ProteinID:
XP_001386472
JGI:
64197
UniProt:
A3M022
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Position
8:410873..413929
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AA seq
981 aa
AA seq
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MSETVSLHKLVKKAVHSKLSFKTFLGLFSQLNTKQVVQDGEYQTEILEIVQNPRNLNDKK
ITEYKVVLAIQLSLSSSEELKRFWGNLSKISLVGQVDYLIRLNKILKYEYSKYDKDIVRL
LIKVQYCDYIVEVLDSFGDKKLSTEQKSLANHIVFFASSVIEHVVVKDEALVNDLVFQLA
TRLEGLRLSNLLDFLLLKSKNILSEDQIRLTDSSGSGEDKSSDLPTITTSLYKNLSVGSL
SSAKQETYNETIKFLWLNKIMKSWKFADNESIFNNFVHNFIPSSDKNKNPYLTSFELIKA
TFKGFGYAVINNDDCYVLFNWKNFIITRIPVILSTLKFANVNDEETLERAVLNAFNSLPD
SIVKVLTNLASGSTKVYDLRQIFIKSLIFNRLLPPVAFQKFFPMESKITQQVILSELAQY
NHDLNLRRKFNDKLINVNSEFTSLEESGLLELCNSLPASLEYSYSRQIELSNAINDIIDE
MKISREHEKLNRLLLSVMSNVQLTNILVFNSNPYVVLGKMIDYIDSENFRIDDDDENFQD
VYSYCGVLILSIISIIEKFKIDLSTFNIKNSFALDYINNFYYRLCDDLTNQIPVNSDEED
NTIATNYNNLLIDWINALFDDSNDGLSDDLIKSISIKQIYKLIPLVYQQAITATSIGKID
FSILTNGIDYLSQVFLIPTTVSIINWLLSEISNKKTDAESLPVKVLSEIVKSNISSESGS
QELSSLVFKIVVNICGSNILIALKKIKDWENSQRIRDVVSIVTANLDSNYVEKDLSLPES
KSDININEQIKSHLVNFQQQADSPTPIHAFIHRFISDSKDQVLRVLLQEVTSYQKQNNEA
TKIFINLASYLVVSSSIDSVEDKKYWHGYLSNVSSSATEHKILKNSDKEFNSSMDYHYSS
IFNDASSGASNDDDLFNDKSSKQLSSGKLLEQLRTKVNRYNNLLAKFNVIFAENQDPSSP
WHKTVNTLADKLLDDINDLYI
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagacagtttctcttcataagttggtgaagaaggcagttcatctgaagttgctg
ttcaagacttttcttggacttttttcccaattgaacacaaaacaggtcgttcaagatgga
gagtaccagactgagatactagaaatcgtacagaatccccgaaatttgaatgataaaaag
ataactgagtataaagtagtattggccatacaattgtctttatcttcctctgaagagttg
aaacgtttttggggcaatttatctaaaatctcactcgttggccaagtggactatttgatc
cgattgaacaagatcttgaagtatgagtactccaagtacgacaaggatatcgtgcgattg
cttataaaggtccagtactgtgactacattgtggaagttcttgatctgtttggtgacaag
aagttgctgacagaacagaagtcgttggctaaccatatagtcttctttgcttcttctgtt
atagagcatgttgtggtgaaggatgaagctttggtaaacgaccttgtttttcagttagcc
acacgtcttgaaggtcttcgtttgagcaatttgctagattttttgcttttgaaatctaag
aatatattgagtgaagatcaaatcagacttactgacagttctggctctggtgaagacaag
tcactggacttgcccactatcaccacctctttgtacaagaacttgtcagtgggcagcttg
agttcagccaaacaggagacatacaacgagactatcaaatttctctggctaaacaagatt
atgaagctgtggaaatttgcagataacgaaagcatcttcaataatttcgtacacaacttc
attcccagcagcgacaagaacaaaaatccgtatttgacatcgtttgagttgatcaaagcg
acgtttaagggatttggctatgctgtgataaacaacgacgattgctatgttcttttcaac
tggaaaaatttcatcataacgagaattccagtcattttgtctacattgaaatttgcaaat
gtaaacgacgaagagacgttagaaagagctgtactcaatgcgtttaactctcttcccgat
tctattgtaaaagttctaacgaatttggctctgggaagtactaaagtgtatgacttgaga
cagatttttatcaagagtttgatatttaacagattgttaccacctgtggcttttcagaaa
ttcttccccatggagtcgaaaataactcaacaggtgattttgtctgagcttgcacagtat
aatcacgatttgaacttgcgtcgcaagtttaacgacaagttgattaacgtaaacagcgag
ttcacttctttagaagaatctggattattggagctttgcaattctctccctgcttcttta
gaatatctgtacagtagacaaatcgagttgagcaacgctatcaacgatatcatcgacgaa
atgaagatctcccgtgagcacgagaagttgaaccgccttcttttgtctgtgatgtcgaat
gttcaattgacaaacattcttgtcttcaacagcaacccgtatgtcgtgttgggcaaaatg
atcgactatattgattctgagaactttcgaatcgatgacgacgacgaaaacttccaggat
gtgtattcgtactgtggagtgttaatcttgtcgatcatttccattatagagaaatttaag
attgacttgtctacgtttaacatcaagaactcgtttgcattggactatataaataacttc
tactatcgtctatgcgatgacctcacaaatcaaatcccggtcaatagtgacgaagaagat
aacactatagcaacaaactacaacaatttgttgatagactggatcaatgccttattcgat
gatagtaatgatggcttatcagacgatttgatcaagtcaataagcatcaaacaaatttac
aaacttatccctcttgtttaccaacaagccattaccgcaacaagtattggaaagattgac
ttttctattctcaccaacggaattgattatttgtcacaggtatttttgattcctacaacg
gtgagtataatcaactggttactcctggaaatttccaacaagaagactgatgctgaaagc
ttgccggtaaaagtgttgtccgaaatcgtgaaatccaatattagtagtgaatcaggttca
caagagttgtcttctttggtattcaaaatcgtcgtcaacatatgtggaagtaatattttg
atcgctttgaagaaaattaaagactgggaaaattcgcaaagaatccgagatgtggtctct
atagtaacagcaaatttggactccaactatgttgaaaaagatcttagcttgcctgaatcc
aagctggacattaacattaatgaacagataaaatcgcaccttgtcaacttccagcaacag
gcagactctccaacaccaattcatgcctttatacatagattcatcagcgactccaaagat
caagtgttgcgagtgttgcttcaggaagtcacctcgtaccagaagcagaacaacgaggcc
acaaagattttcatcaatcttgcttcctacttagtcgtttcaagctccatagactctgta
gaagacaagaagtactggcacggctatttgtctaatgtttcgagttctgcaacagaacac
aagattttgaagaattctgataaggagttcaactcttctatggactaccactattcgagc
atctttaatgacgctagctctggtgcgtctaatgacgatgacttgttcaacgacaaaagc
tcgaagcaattgtcttcaggaaaattgcttgaacaactccgaacaaaggtcaatagatat
aacaatttgttggccaagttcaatgtgatttttgctgagaatcaagatccttccagcccc
tggcacaagacagtgaatacattggcagataagcttcttgacgatatcaacgacttgtac
atatag
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