Scheffersomyces stipitis: PICST_65878
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Entry
PICST_65878 CDS
T01023
Name
(RefSeq) predicted protein
KO
K27407
RNA-binding protein VTS1
Organism
pic
Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_65878
04131 Membrane trafficking [BR:
pic04131
]
PICST_65878
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
PICST_65878
Membrane trafficking [BR:
pic04131
]
SNARE
SNARE associated proteins
Others
PICST_65878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
DUF7226
SAM_1
Motif
Other DBs
NCBI-GeneID:
4840083
NCBI-ProteinID:
XP_001385420
JGI:
65878
UniProt:
A3LX24
LinkDB
All DBs
Position
6:363547..366052
Genome browser
AA seq
633 aa
AA seq
DB search
MESNESPNPYMSRPIILSPPPLEQHKFANFQSSSASTAASTTPSGSAGSTQQLPVGHAER
QQSVGYNLQHEFETLTVDLDLDLRNNRDSNSITSSSRNNTTGGNPSPAAASSTSLGHGHS
LLAPAASKHGFSSELLMSSGNSSGLNHPFRENAISPIPAVASANAGIASLLATTSSGNTT
NNGNSLLHPPPLASIPNRPQSVNDFSNFFNRQQQLEPQASAPLTSNFYSELMTFTGWIEN
LNPQDTVSMIDYLCSNLPLDILLTFKSKLDNHLTSHPSQQKGQTAPPYGNIMSPYSSYSQ
SDLYNDMDQLNLGNEKTLTQPQPTHLYQPKPKQNTYRTAAQYLAFVEQKNPRPKSAEPSL
NVNGANRFSAHQQFERAKSPTSHLYEKTNFLQLAAGNSSHNTHSQQQQQPQQQPQQQQQQ
QQQQGSSQDDSLELNAHTALKLGALATINSRVALDSNRKHVYHQHAGNVSYYQTNASPHY
PGQQMKTMAQSLSHEEQINRTLNSSSVPVSIHRNNANSSKSPKSKKSEQKQENLSGINSV
VTGSTNMSVSSSLTGSSNSSMPSEVANIELLNNIPAWLKLLRLHKYTDCLKDTPWKELIE
LDNEQLELKGVAALGARRKLLKAFDAVKLTLEE
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaaacgaatctccgaacccatacatgtctcgaccaatcatattatcgcctcct
cctttggagcaacataagtttgctaatttccagtcgtctagtgcttcaaccgctgcgtct
actactccttctggaagtgccggatccactcaacagctccctgttggccacgctgaaagg
cagcaaagtgttggttataacttgcagcacgagtttgagactttgacagtcgacttggac
ttagacttaagaaacaaccgtgattctaattctattacaagttcttctagaaacaacacc
actggcggaaacccatccccggctgctgcttcgtcaacttccttgggacatggacacagc
ttgttggctcctgcagcttctaagcacggattctcgtcagaattgcttatgtccagtggc
aacagctctggtttgaatcatcctttcagggaaaacgccatttcgcctatccctgctgta
gcttctgccaacgctggaatcgcgtccttattggctacaaccagttcaggaaatactacg
aataacggcaacctgcttttgcatccaccacctctcgcatctatacccaatagacctcag
tcagtgaacgatttctcaaacttcttcaatcgtcagcagcagctcgaaccacaagccctg
gctcccttgacttccaacttctatctggaactcatgactttcacaggctggattgaaaac
ttgaatccccaggacactgtatccatgattgattacttgtgctccaacttgccattggat
atcttactcaccttcaagtccaagttggacaaccacttgacgtctcatccctcgcagcaa
aagggccagactgccccaccgtatggcaatatcatgtcgccgtatagctcttattcccag
ctggacttgtataatgacatggatcaattaaacttgggcaatgagaagactcttacccaa
ccacaaccaacccatctctaccaaccaaagccaaaacaaaatacttatagaaccgcagcg
cagtatcttgcttttgtagagcaaaagaacccaagaccgaaatctgctgaacccagcctc
aatgtgaatggagctaatcgtttttcagcacatcaacagtttgaacgtgccaaatcgcct
acttctcatttatatgaaaagacaaactttttgcaattagctgccggcaactctctgcat
aacacccactctcagcaacagcaacaacctcagcaacaacctcaacagcaacaacagcaa
cagcagcaacaaggttcttcccaagatgattctttagaactcaatgctcatactgccttg
aaattgggtgctttggccaccattaattctcgtgttgctttagactctaacagaaagcat
gtctaccatcaacatgctggaaatgtcagctactaccagacgaatgcttcgcctcattac
cctggacagcagatgaagacgatggctcagtcactttctcatgaagaacagatcaacaga
acattgaattcgtcgtcggtgcctgtttccatccatcgtaacaatgccaatagttccaag
tcgccaaagagcaaaaagagcgaacagaagcaagagaatttatcaggaataaactctgtc
gtaactggctctaccaatatgagtgtttcatctagtcttaccggctcgtctaactcgtct
atgcctagtgaagttgccaacatcgaattgttgaacaacatcccagcgtggttgaagtta
ttgcgtttgcacaagtacaccgactgtttgaaagatacaccatggaaggagttgatcgag
ttggacaacgaacagttggaactaaagggtgttgcagcgttgggtgcgagaagaaagttg
ttgaaggcattcgatgccgtcaagttgacattagaagagtaa
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