Scheffersomyces stipitis: PICST_67138
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Entry
PICST_67138 CDS
T01023
Symbol
CDC48
Name
(RefSeq) Cell division control protein 48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pic
Scheffersomyces stipitis
Pathway
pic04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PICST_67138 (CDC48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_67138 (CDC48)
03009 Ribosome biogenesis [BR:
pic03009
]
PICST_67138 (CDC48)
04131 Membrane trafficking [BR:
pic04131
]
PICST_67138 (CDC48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pic04147
]
PICST_67138 (CDC48)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PICST_67138 (CDC48)
Ribosome biogenesis [BR:
pic03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PICST_67138 (CDC48)
Membrane trafficking [BR:
pic04131
]
SNARE
SNARE associated proteins
Others
PICST_67138 (CDC48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PICST_67138 (CDC48)
Exosome [BR:
pic04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PICST_67138 (CDC48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_33
AAA_5
CDC48_2
TIP49
AAA_22
AAA_14
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
IstB_IS21
ATPase
Parvo_NS1
AAA_7
AAA_17
NPHP3_N
AAA_25
AAA_18
ResIII
ABC_tran
AAA_24
Vps4_C
Sigma54_activat
PhoH
DUF815
AAA_lid_PRS2_C
Zeta_toxin
KAP_NTPase
Zot
UFD1_N2
Motif
Other DBs
NCBI-GeneID:
4837646
NCBI-ProteinID:
XP_001382708
JGI:
67138
UniProt:
A3LQG9
LinkDB
All DBs
Position
2:2496505..2499400
Genome browser
AA seq
829 aa
AA seq
DB search
MTGEEEKKPHFDASGAHAVDDKTATAILRRKKKDNALVVDDATNDDNSVITMSSNTMELL
QLFRGDTVLVKGKKRKDTVLIVLADDDMDDGVARINRCVRNNLRVRLGDIVTIHPCPDIK
YANRISVLPIADTVEGITGSLFDLYLKPYFVEAYRPVRKGDLFTVRGGMRQVEFKVVEVD
PEEIAIVAQDTIIHCEGDPINREDEENNLNDVGYDDIGGCKKQMAQIRELVELPLRHPQL
FKSIGIKPPKGILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKA
FEEAEKNSPSIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNR
PNSIDPALRRFGRFDREVDIGVPDAEGRLEILRIHTKNMKLADDVDLEAIASETHGFVGA
DVASLCSEAAMQQIREKMDLIDLEEETIDAEVLNSLGVTMDNFRFALGNSNPSALRETVV
ENVNVTWDDIGGLDAIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAK
AVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGAS
QGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPD
EPARLSILQAQLRNTPLEPNLDLAEIAKITNGFSGADLSYIVQRSAKFAIKDSIEAQIRI
DRAKAEKEKVKTEEDVDMTKTAVEEEEEEDPVPFITRAHVEEAMKTAKRSVSEAELRRYE
SYAQQLQASRGQFTNFRFTENDGAAAGNEGSGNSGAAFGSVEEEDDLYS
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgactggagaagaagagaagaaaccccactttgatgcctccggtgcacatgccgtcgac
gacaagaccgccaccgccatcttgagaaggaagaagaaggacaacgccttggttgttgac
gatgccactaacgatgacaactcggtcatcacgatgtcgtccaacacaatggaattgttg
cagttgttccgtggtgacaccgtgttagtcaaaggaaagaagagaaaggataccgtgttg
atcgtattggctgacgatgatatggatgatggagttgcccgtatcaaccgttgtgtgcgt
aacaacttacgtgtcaggttgggcgacattgtcaccatccatccttgtcccgacatcaag
tatgccaacaggatctctgtgttgcctatcgccgacactgttgagggcatcactggatcg
ttattcgatctttacttgaagccctacttcgtggaagcttatagacccgtaagaaagggc
gacttgttcaccgtcagaggtggtatgagacaggtcgagttcaaggttgtagaggttgac
ccagaagagattgccattgtagcccaagacaccatcattcactgtgagggtgatccaatt
aaccgtgaagacgaagaaaacaacttgaacgatgtaggttacgacgacattggtggctgt
aagaagcaaatggcgcagatcagagaattggtggaattacctttgagacaccctcaattg
ttcaagtccattggtatcaaacctcctaaggggattttgatgtacggccctcctggtact
ggtaaaaccatcatggctcgtgctgttgctaacgagactggtgcctttttcttcttgatc
aatggtccagaaatcatgtccaagatggccggtgaatcggaatcgaacttaagaaaggcg
tttgaagaagcggaaaagaactccccctccatcatcttcatcgacgaaattgactcgatt
gctccaaagagagacaaaaccaatggtgaagtcgaaagaagagtcgtttcccaattgttg
actcttatggacggtatgaaggccagatccaacgtcgttgtgattgccgcaaccaacaga
cccaactccattgatccagccttaagaagatttggtagattcgacagagaagttgacatc
ggtgtacctgatgctgaaggacgtttggaaatcttaagaatccacaccaagaacatgaag
ttggccgacgatgttgatttggaagcaatcgcctcggaaactcacgggtttgtcggagct
gatgttgcctcgttatgttccgaagctgccatgcaacagatccgtgaaaagatggacctt
atagacttggaagaagaaactattgatgccgaagtcttgaactctttgggtgtcaccatg
gataacttcagattcgctctcggtaactccaacccatctgcattgcgtgaaactgtggtt
gaaaacgtcaatgtcacctgggacgacattggtggtttagacgccatcaagaacgaattg
aaagaaaccgtggaatatcctgtcttgcatcctgaccaataccagaagtttggtttggct
ccaaccaagggtgtcttattctttggtcctccaggtactggtaagacccttttggcaaag
gctgtagcaacagaagtttctgccaacttcatttcggtgaagggtccagaattgttgagt
atgtggtacggtgagtctgaatccaatatccgtgatattttcgacaaggccagagctgct
gctccaaccgttgttttcttggatgaattagattcgattgccaaggctagaggtgcttct
caaggtgatgctggcggtgcttccgaccgtgtcgtcaaccagttgttgactgaaatggat
ggtatgaacgccaaaaagaacgtcttcgttatcggtgccaccaacagacccgatcaaatt
gaccctgccttgttgagaccgggtagattggatcaattgatctacgttccattgccagat
gaaccagccagattgtcgatcttgcaagctcagttaagaaacactccattggagcccaac
ttggatttggctgaaatagccaagatcacaaatgggttctctggtgctgatttgtcatac
attgtacaaagatcagcaaagtttgctattaaggactctattgaagcccaaattagaatc
gacagagccaaggccgaaaaggagaaggttaagactgaagaagatgtcgacatgaccaag
accgcagtagaagaagaagaggaagaggatcctgttccatttatcactagagcacatgtt
gaagaagctatgaagaccgccaaacgctctgtttccgaagctgagttacgtcgttacgaa
tcgtatgcccaacagttgcaagcatcaagaggtcaattcaccaacttcagattcactgaa
aacgatggtgcagctgctggtaacgaaggatctggtaactctggtgctgcttttggtagc
gttgaagaagaagatgatttgtacagttaa
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